Xiphophorus maculatus (southern platyfish): 102220207
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Entry
102220207 CDS
T02923
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
102220207 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xma03036
]
102220207 (chd8)
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
102220207 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
HDA2-3
HTH_Hrp3
MUN
DDRGK
Motif
Other DBs
NCBI-GeneID:
102220207
NCBI-ProteinID:
XP_023191274
Ensembl:
ENSXMAG00000000850
LinkDB
All DBs
Position
6:8587333..8613976
Genome browser
AA seq
2601 aa
AA seq
DB search
MADPIMDLFEDTPLFSLDSLPDDSFSHGSSDPVEEALKLALGQAVPTGDPESAPDLAISS
SLGVPVAAPVIPDPAPVHVPTQQPVPAAPVQTVSVAQAVDAGAAAFITSAPTPVETVPQM
QAQTTISVASNASGASSSTVLLSSPLTVSSSPATTTTATTQQLTQITHQLTPQQLAAITQ
QAGGKIVILKGPQGQAQVLQAVSGTAGQAGGKVIRLLSGTPFKPGMSILQGGTVLNQASP
GQTQVKVGAAGVQRLLQSANGPVKQVLLTSMPQQTQGQTVQVQIPAQAQMAQGQTTVQVQ
PQPQTAQIQLQPQAQIQVQPQGQAAQTQGQVQLQPAMQGQTQGGEAKRITLVLQQPSQSG
SAAPAGQAVTAQQQVAPGGQQQPTQAPARLVLGQLPSGKLVLQGSQLAALTQARAAGQAE
GQPKVLTIQLQVQQQPNQQGGVKYQLVSGAGGTGSPQVLQISQGQGGQRVAVPLKMLLQP
QTSSATSSGGTVSVVKVINPSTAAPSATTTTPSQAIRITKAPGEPAAVRRVEILCKQEKA
NRIVAEAIARAKARGEKNLPRVLNQDELPSTQTSPEMGGTLTVVSTAKKKSSGGGSKKKS
PISGGPIPKIIVGTDKKGKVVKISGGAIAVSGCAVIPGAGNKSKSKAKANTITLVGAKKR
KRNASSDVSDGELSPPSPAALEDDMIMKRRSNRVVKRKKYTEDLDIKITDDEDEQEDVDV
TTTAAAVASISGGAAAQLKQEVELDGNGQPSMQFFVENPSEEDAAIVDKVLSMRITKKEV
SPGQYTNAEEFFVKYKNYSYLHCEWATLEQLEKDKRIHQKIKRFKTKHAQMRHLFQEDEE
SFNPDYVEVDRILDVSHSVDKDNGEPVIYYLVKWCSLPYEDATWELKEDVDEGKVEEFGK
IQNRQPRLKRSARPPASSWKKLEETREYKNGNTLREYQLEGVNWLLFNWYNRQNCILADE
MGLGKTIQSITLLSEVYAAGVQGPFLVIAPLSTITNWEREFSTWTDMNAIVYHGSLASRQ
MIQQYEMYCKDDKGHLIPGAYKFDALITTFEMILSDCPELREISWRCVIIDEAHRLKNRN
CKLLDSLKMLDLEHKVLLTGTPLQNTVEELFSLLHFLEPTQFPSEIEFLREFGDLKTEEQ
VQKLQSILKPMMLRRLKEDVEKNLAPKQETIIEVELTDIQKKYYRAILERNFSFLSLGAN
SNSNVPNLLNTMMELRKCCNHPYLINGAEEKIVAELREKYDPLAPDFHLQALIRSAGKLV
LLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLINKRYLYERIDGRVRGNLRQAAIDRFS
KPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR
LITRNSYEREMLDKASLKLGLDRAVLQSMSGNKDSNVNGLQQFSKKEIEDLLRKGAYAAI
MDENDEGSRFCEEDIDQILQRRATTITIESEGKGSTFSKASFVASENRTDIALDDPEFWE
KWAKKADIDMDSINQKNTLVIDTPRIRKQTRQYSSLRGEGGDLSDLDSDDEYPPANSRHS
RSSRRSDRHSGGGYGRTDCFRVEKHLLVYGWGRWRDILAHARCKRRLSERDVETICRVIL
VFCLMHYRGDENIKSFIWELITPPENGREPQTLLNHSGLSIPVPRGRKGKRVKAQSTFDV
QKVEWIRKYNPDTLLLDDSYRKHLKHQCNKVLLRVRMLYYLKQEVIGEHAESVLKGADIR
DVDIWMPEMEQQEVPAAWWDSDADRSLLAGVFKHGYEMYTTMRADPCLCFVERVGRPDDK
AIDAEQHTGDAELGDDADFDKFSEDPEFKPASRLSKDLFDEPDSMNVDDEISVEDKPVPM
VTESAAVQSGVCEWPSSSSLTARLRRLITAYQRSYRQEQLKIEAEAKGDRRRRRCEQASK
LKEIARQERQQRWTRREESDFYRVVSTFGVEKIKKEPGVSEEGDAEFDWTRFRTFARLDK
KTDESLSRYFRSFVTMCRRVCHLPQGRGEEPSELTQTVAPITEERASRTLYRISLLRRLR
ERVLPHPSLEERVLLAPRSSELPAWWSMPGHDRQLMLGASLHGVSRTELSIFSDPQFTFN
SARDEFIQNQQALPPPPPPPPPPIMTLSQPKSEMDLPGAKGEGADETALLFGGRIGSDLQ
STPLSHHGGKAQGPDWSFKNSRERTEKIGRKGEGGSDSDSDSDSGSSSSERSGSSDDSGD
SDEEVAGGGMKVRDVDEENSLLSMTPSQDSILPPEPIRVDWPKDRVLINRLDNLCHLVLS
GQWPSGRRYIPEAQLNPSSELVSEDMAYTRVIRKPSSAPTGIGAEGEDGEFTVKLLKEEG
LKLTFSKQALLPNGSGGESSGRKKRKDQELSELDGLHDPLERAPRRRDPPTWLKENPDYE
VEGDMLELLVNRSKRKRRRRANKPLTGTEKVKVINMLTGKKVGAAFCPMLQDLKEYLEEN
PNIAVAPEWSETVQKSGLLPESLFHRLLTEHSEIPKKSHRRRHHHHHHHHHHHYHTPEPT
PEDPTVDCIEEETLVSDGAYMMDEEDLETSHHFLTSPDFDVKMEGGDSLSQGDYDSSDQE
ALLDDVIMAQKDSDSSSSSDD
NT seq
7806 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcccattatggacctcttcgaggacactcccctgttcagcctggactccctg
ccggacgactccttctctcacggttcctcggaccccgtggaggaagctctaaagctggct
ttggggcaggccgtcccgacgggtgatccggagtccgctcccgacctcgccatcagctcc
agcctcggcgttcctgtagcagcaccggtcatcccggacccggcccccgttcacgttccc
acccagcagccggtgccagcggcgcccgttcagactgtttctgtcgcccaggccgtcgac
gctggagcggcggccttcatcacctcagcccccacccctgttgagactgtgccacagatg
caggcccagactaccatctctgttgccagcaacgccagcggggcttccagtagcaccgtc
ctgctgagctcacctctgactgtttccagctccccggcgaccaccaccactgccaccacg
cagcagctgactcagataactcaccagctcacgccccagcagttagctgccatcacgcag
caagccggtgggaaaatcgtcattctcaaaggtccccagggtcaggcccaggtgctgcag
gccgtatcaggaaccgcgggtcaggccggtggaaaggtcatccgtctgttgtctggcacg
ccgttcaagcccggcatgtcaatactgcagggaggtacggtcttaaatcaggccagtcca
ggacagacccaggtcaaggtgggggccgcaggggtgcagcgcctgctgcagtccgccaat
gggccggtcaagcaggtgttgctcacgtccatgcctcagcagacacaaggtcagacggtt
caggtgcagattccagcccaggcacagatggctcaaggtcagactactgtccaggttcag
cctcagccccaaaccgctcagatccagctccaaccccaggcccagatccaggtccagcct
caaggccaggcagctcagacccagggtcaggtgcagctccagccggccatgcagggccag
acgcagggtggcgaagcaaagcgcatcaccctggttctccagcagccgtcccagtccggc
tctgcagcacctgctggtcaagccgttaccgctcaacagcaagtggcacctggaggtcaa
cagcagccaacgcaggcccctgccaggctggttctgggtcagctccctagcggcaaactg
gtgctccagggaagccaactagcggctctgacccaggcccgggctgcaggtcaggccgag
gggcagcccaaggtcctcacaatccagctgcaagtacaacagcagcccaatcaacaagga
ggagtgaagtaccagttggtatcgggggctggcgggaccggcagcccgcaggtgctgcag
atttcccagggccaaggaggacagcgggtggccgtacctctcaaaatgctgctgcagccg
cagacaagctcggccacatcttccggcggcaccgtctctgtggtgaaggtcatcaacccg
tcgacggcagccccctccgctacgaccacgactccatcgcaggccatccgcatcaccaag
gcccccggcgagcccgcggccgtccgacgcgtggagatcctctgcaagcaggagaaggcc
aatcgaatagtggcggaggccatcgctcgggccaaagcacgcggcgagaagaacctgccc
agagtcctgaatcaggacgagcttccgtctacgcaaacctccccggagatgggagggact
ttgactgttgtctcaactgctaaaaagaaaagcagcggtggggggagcaaaaagaaaagt
cccatatctggaggaccgatacccaaaatcattgtggggaccgacaagaagggcaaagtg
gtgaaaatatcaggaggagcgattgcagtgagcggctgcgcagttatacccggagctgga
aacaaaagcaagagcaaggctaaagcaaacactattaccctggtaggagcaaagaaaaga
aagagaaatgcgtcttcagacgtctctgatggggagctgagcccaccttcacctgccgca
ctggaggacgacatgattatgaagaggcgctccaaccgggtggtgaagaggaagaagtac
acggaggacttggatattaagataacggacgatgaggacgagcaggaagacgtggatgtt
accacgactgcagccgccgtggcctccatcagcggcggggcggcagctcagctgaaacag
gaagtggagctcgatggcaacggacagcccagcatgcagttttttgtggagaatccgagt
gaggaagatgccgccatcgtagataaagtcttgtcaatgaggataactaagaaagaagtt
tccccaggccagtatactaatgccgaggagttctttgttaaatacaaaaactattcatac
ctgcactgtgagtgggccacgctggagcagctggagaaagacaagaggatccatcaaaag
atcaagagattcaagaccaaacacgctcagatgaggcatttgttccaggaggacgaggag
tcttttaacccagactacgtggaggtggacaggatcctcgacgtgtcccacagcgtggac
aaagacaacggcgagcccgtcatctactacctggtgaagtggtgctctctgccttatgaa
gacgctacttgggagctaaaggaagacgtcgacgaggggaaagttgaagagttcggcaaa
atccaaaacagacagcctcgcctaaagagatcggcgcggcctcctgccagctcatggaaa
aagttagaggaaacccgagagtacaagaacggcaacacactaagagagtatcagctggaa
ggagtcaactggcttctcttcaactggtacaacaggcagaactgcatcctggcagacgag
atgggtctggggaagaccatccagtccatcacgctgctgtccgaagtgtacgccgccgga
gtacaaggccccttcctggtcatcgctccgctctccaccatcaccaactgggaaagggag
ttctccacctggaccgacatgaacgccattgtgtaccatggaagcctcgccagccggcag
atgatccagcagtatgagatgtactgcaaagacgacaagggacatttaattccaggtgcg
tacaagtttgacgccctcatcacgaccttcgagatgattctctcggactgccccgagctg
agggagatctcgtggcgctgcgtcatcatcgatgaggctcaccggctaaaaaaccgaaac
tgcaaactgttggacagtttgaagatgctcgacctggaacacaaagtgctgttgaccggc
acgcctcttcagaacaccgtggaggagcttttcagcctacttcacttcctggagccaact
cagttcccgtctgaaatcgaattcctccgagagtttggagacctcaaaactgaggagcag
gttcagaaactccagtccattttaaaacctatgatgttgcggagactcaaagaagatgtg
gagaagaacttggcacccaagcaggagaccattattgaggttgagttgactgatatccag
aagaagtactaccgggccattctggagaggaacttcagcttcctgagtttaggagccaac
agtaacagcaacgtccccaatctgctcaacacgatgatggagctccgaaagtgctgcaac
cacccctacctcattaatggtgccgaagagaagatcgtggcggagttgcgggagaagtac
gaccccctggccccggactttcatttgcaggccctaattcggtccgccggcaaactggtg
ctacttgataaactgctgcctcggctcaaggccggcggccacaaagtgctcatcttctcc
cagatggtgcgctgcttagacattctagaggactacctcatcaacaagagatacctttac
gagagaattgatggaagagttcgtgggaacctgcgacaggcagccatcgatcggttcagc
aagccggattcggatcgcttcgtcttcctcctttgtactcgtgctggcggtctgggtatt
aacctgaccgccgctgacacctgtgtcatatttgactctgactggaaccctcaaaacgac
ctgcaggcccaagcaagatgccatcgtatcggccagtcgaaggcagtcaaggtctaccgc
ctcatcaccaggaattcctatgagagggaaatgctggacaaagcgagtctgaaactcggt
ctggaccgtgctgttctacaaagcatgagcggcaacaaggacagcaacgtcaacgggctc
cagcagttctccaagaaggaaatcgaggaccttttgaggaaaggagcttacgccgccatc
atggatgaaaacgacgaaggcagtaggttctgcgaggaagacattgaccagatccttcag
cggcgagccaccacaattactatcgagagcgaaggcaaaggttccacgttctctaaagcc
agcttcgtcgcatctgagaaccgcaccgacatcgccctggacgaccccgagttctgggag
aagtgggccaagaaagccgacatcgacatggattccattaatcagaagaacacacttgtg
atcgacactcccaggatccggaagcagacgcgccagtactccagtttgcgaggcgaagga
ggagacctgtcggatttggacagcgacgacgagtatccgcctgccaattcaagacactcc
agatcttctcgccgctcagaccgccacagcgggggaggttacggccgtaccgactgtttc
cgggtggagaaacacctccttgtctatggatggggccgctggagggacatcttggcccac
gccagatgtaagcgacgtctgagcgaacgtgacgtagaaaccatctgccgtgtcattctg
gtgttttgtctaatgcactatcgtggcgacgagaacataaagagtttcatttgggagctc
ataacgccaccggagaatggccgagaaccccaaacactactaaatcactctggcctttct
atccctgttccaagaggcaggaaaggtaagagggtcaaagctcagagcacgttcgatgtt
cagaaggtggagtggatccgcaagtacaaccccgacaccctgctgctcgacgacagctac
cgcaaacacctgaagcaccagtgcaacaaagtgttgctcagggtccgtatgctctactac
ctgaagcaggaggtcataggtgaacatgcagagtctgtcctgaagggggctgacattagg
gatgtcgacatctggatgccggagatggagcagcaggaggtgcctgcagcttggtgggac
tctgacgcagaccgctctctgctcgctggcgtcttcaaacatggttatgagatgtacact
accatgcgggccgatccctgcctctgcttcgtggagagagtcggtcggccagacgacaag
gccatcgatgctgagcagcacactggggacgccgagcttggagacgatgccgactttgac
aagttctcagaggatccagagttcaagccagcgtccagactctccaaagatctttttgat
gagcctgactctatgaacgtggatgatgagatctcggtggaggacaagccggtaccgatg
gtcacggaaagcgcagccgtccagagcggcgtgtgcgagtggccttcgagctcttcgctg
acggcgcggttgaggcggctgatcacggcgtaccaacgcagctacagacaggagcagctg
aagatcgaagccgaggccaaaggggatcgccggcggaggcgctgcgaacaggccagcaaa
ctgaaggaaatcgcacggcaggaacgacagcagcggtggacgcggagagaagagagcgac
ttctaccgcgtggtctccacgtttggagtggagaagatcaagaaggagccgggtgtctca
gaggagggggatgcggagtttgattggacgcgtttccgaacttttgcccgtctggataaa
aaaaccgatgagagcctcagtcgatacttccgttcattcgtcacgatgtgccggagagtg
tgccacctcccccaaggccgtggtgaagagccgtcagagctgactcagactgtggctccc
atcacagaggaacgtgcctcccgcacgctgtaccgcatcagcctcctgcggcgccttcgc
gagcgcgtcctgccccacccctccctggaggagcgcgtcctcctggcgccgcgcagctcc
gagctgcctgcctggtggagcatgccgggccacgaccggcagctgatgctcggcgcctcg
ctccacggcgtcagccgcaccgagctctccatcttctccgacccgcagttcaccttcaac
tccgctcgcgacgagttcatccagaaccagcaggctttgccgccacctccacctcctcct
cctccgcccatcatgacgcttagccagcccaagtctgagatggacttacctggagcgaag
ggggagggggccgacgagaccgccctactgtttggagggagaatcggtagcgacctgcag
agcacgcccttgagtcaccatggcggcaaagcacagggtccagactggagcttcaaaaac
agcagggaaagaacagaaaaaattggaaggaaaggcgagggagggtccgattcggattca
gactccgactcgggctcatcgtcctcagagcgatccggtagcagcgacgacagcggagac
agtgacgaggaagtagcaggagggggcatgaaggtaagagatgtggatgaagaaaacagt
ctgctctccatgactccatctcaagacagcatacttccacctgagccaatcagagtcgac
tggcctaaggaccgcgtgctgatcaaccgcctggacaacttgtgtcacctggtgctgtcg
ggtcagtggccctcggggcggcgctacatcccagaagcccagctcaacccaagctccgag
ctggtgagcgaggacatggcgtacacccgggtcatccggaaacccagcagcgcaccgacc
ggcatcggggcggagggagaggacggagagttcaccgtaaaactcctcaaggaggagggt
ctgaagctgacgttctccaagcaggctctgctgcccaacgggtcagggggagagagcagc
gggcgcaagaaacgcaaagaccaagagctatcggagttagacggcctccatgacccactg
gagcgtgctcctcgacgaagggacccccccacgtggttgaaagagaatccagattatgag
gtggaaggagacatgttggagctgctggtgaacaggagtaagaggaagaggaggaggcga
gcgaataaaccccttacaggcactgaaaaggtcaaggtcatcaacatgctgacgggaaag
aaggttggagctgctttctgtccgatgctgcaggatctgaaggagtatctggaagagaat
cctaatatcgccgttgcacccgagtggtctgagacggttcaaaaatcaggtttgctgcct
gagtccctcttccaccgcctgctgacggagcactccgagatcccgaagaaaagccaccgg
cggcgtcatcaccaccaccaccaccaccaccatcaccattaccacactcccgagcccacg
cccgaagaccccaccgtggactgcatagaagaagagactctggtttcggacggagcctac
atgatggacgaggaggacctggagacgtcccaccacttcctcaccagcccagactttgac
gtcaaaatggagggcggcgacagcctctcccaaggcgactacgacagctcggatcaagag
gcgctgctggatgacgtcatcatggcgcagaaggactctgactcttcatcaagctcagac
gactga
DBGET
integrated database retrieval system
