Xiphophorus maculatus (southern platyfish): 102220357
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Entry
102220357 CDS
T02923
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xma03009
]
102220357 (ighmbp2)
03012 Translation factors [BR:
xma03012
]
102220357 (ighmbp2)
Enzymes [BR:
xma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102220357 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
102220357 (ighmbp2)
Ribosome biogenesis [BR:
xma03009
]
Eukaryotic type
Other ribosome biogenesis factors
102220357 (ighmbp2)
Translation factors [BR:
xma03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
102220357 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
DEAD
Viral_helicase1
Helicase_RecD
ResIII
IstB_IS21
AAA_16
nSTAND3
AAA_22
UvrD-helicase
Flavi_DEAD
SLFN-g3_helicase
PhoH
DnaB_C
AAA_25
Zot
HEM4
ABC_tran
AAA
SpoIIAA-like
SRP54
AAA_31
NPHP3_N
ATPase
UvrD_C
Motif
Other DBs
NCBI-GeneID:
102220357
NCBI-ProteinID:
XP_005807002
Ensembl:
ENSXMAG00000003705
UniProt:
M3ZNC7
LinkDB
All DBs
Position
2:7865423..7873257
Genome browser
AA seq
980 aa
AA seq
DB search
MAVETFVSKTLELLQEEREAEIEETKIWQENISLKDLQNKGVCLLKLQIGSQSTGLYGRT
VIVLEPRKHLGFSSLPSNSFGPGDIVGIYDPSGCSAASQICTGIVTRISQASVSVAVDDL
KDGASFDSDGLYNLLKLANDVTYKRMKRALNALNGYRTGPASCLIPVLFGDAQPSSHSQS
NEFEFFNSKLDDSQREAVSFALSQRELAVVHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILAQSDNANIIADIRKDIDK
ALVGMKKKSEKGERGNFKREIGELRKELKNRETAAIAEILKSADVVLSTNTGACDDGPLK
FLPAEHFDWVMIDECAQALESSCWIALLRARKCILAGDYKQLLPTIKSQKAAAKGLSLSL
MERLIQMYGDSVVRMLTVQYRMNSAIMEWASKEMYNGRLTAHSSVEKHLLKDLPGVACVE
ETSTPLLLIDTAGCGLSEMEIADEQSKGNQGEVDIVSLHIKSLTEAGVKAKDIAVIAPYN
LQVDLLRQKLSARHPEMEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RARRHIAVVCDTQTVGNHAFLKSLVDHMAVFGEVRTAFEYLQDIVPQNYTRDHKATKTNT
SSTSSKQKSRDHGPGKAKEGQKTTSSSKDDTAGSQNHTKSHTPAQKDQKDKSRYAEIRLQ
VENFMKDVNMKNLHFPSSFNSHDRLLVHQIAEELGLVHESRGEGGGRCITVSRPVALEPV
EEPTQEETQEEEPAPPLQSEPPPSQPLVDLKTIHLERMQREQQKREENVQQKKQQNCNPA
AQGAKKSKGKNKTKAGACDIAAAAVPDDDFDALISAVVKADSVCSFVKCKASVLTLGQLC
IFCNRQFCLSHHIPEVHGCGDKAKSHARMRISKEGVLYAGSGKKDKSLDPNKKVYLQRKL
DSKLKDMASQRKPKNKEKDT
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggcagtggagacatttgtgtccaagactctggagcttctacaggaggagcgggaggct
gaaatagaggaaaccaagatatggcaggagaacatttccttgaaggatcttcagaataaa
ggagtttgcctgctgaagcttcagatagggagtcagtccaccggcctgtacggtcgcacc
gtcatcgttttagagcccaggaagcatcttggtttctcctctcttccgagcaacagcttt
gggccaggcgatattgttggcatatatgacccttctggatgcagtgcagcctcgcagatc
tgcacagggatagtaacaaggatcagccaagcttctgtcagtgtggccgttgatgacctg
aaggatggagccagctttgattcagatggtctttataatctcttgaaactggccaatgat
gttacctacaaacggatgaaacgggccttaaatgcattaaatggctacagaacgggacca
gcttcctgtctgatacctgttctctttggagatgcgcaaccttcttctcactcacagtca
aatgagtttgagttctttaattccaaattggacgattcccagagagaagctgtatccttc
gctctttcacagagagagctggctgtggttcatggacctccaggcacaggaaaaaccacc
acagtggtggagatcatcctgcaagctgtgaaacaaggccagaaggtcctgtgttgtgcc
ccctcaaatgttgccgttgataatttagtggagaggcttgctcgctgtaaggccaaagtc
ctgagactgggccaccccgccagactgctggaatccatccagaaacactcactggacgcc
atcctcgctcagagcgacaacgcaaacatcatcgccgacattcggaaagatatcgacaaa
gcattggtggggatgaaaaagaaaagcgaaaaaggagagcgaggaaactttaaacgtgaa
ataggagagctgaggaaagagctgaaaaacagggagacagcagccattgctgagatcctg
aagagtgctgatgttgtgttgtccacaaacactggtgcatgtgacgacggtcctctgaag
ttcctgccggcagagcattttgattgggtgatgatcgatgagtgtgcgcaggccctggag
agcagctgctggatcgctttactcagggcacgtaaatgcatcctggctggagactacaag
cagttactaccaaccatcaaatcacaaaaagctgctgctaaaggcctgtccctgagtctc
atggagagacttattcagatgtatggggactcagtggtccgtatgttaacagttcagtac
cgcatgaacagtgctatcatggaatgggcctccaaagagatgtacaatggacgattaacc
gctcacagctccgtggagaaacatttattgaaagatctgccgggtgttgcctgcgtcgaa
gagaccagcacaccacttcttctgattgacaccgcagggtgtggtctgagcgaaatggag
atcgcagacgagcagtccaaaggcaaccaaggtgaggtcgacattgtttcactgcatata
aagagcttgacggaagctggagtaaaggctaaagacattgctgtgattgctccgtataat
ctacaagttgatcttctgcgtcagaagctttctgcacgtcacccagagatggaaataaag
tctgtggacggatttcagggcagagaaaaagaagctgttgtcctgtcgttagttcgctcc
aacagaaaaggtgaggtgggttttcttgcagaggacagacggataaatgtcgccgtcaca
cgcgcaagacgtcacatcgccgtagtgtgcgacacgcagacagttgggaatcacgctttc
cttaaatctctggtcgatcacatggccgtgttcggtgaggtcagaactgcattcgagtac
ctgcaagatatcgtgccgcagaactacaccagggatcataaagccacaaagaccaacact
tcctccacgtcaagcaagcagaagagtagagatcatggtccaggtaaagcaaaggaaggc
cagaaaacgaccagcagctctaaggacgacacagctggttcacagaatcacacaaagtcc
cacacaccagcccagaaagaccaaaaagacaagagcagatacgctgagatcagactgcaa
gtggagaatttcatgaaggatgtaaatatgaagaatttacatttcccatcatccttcaac
tcccacgatcgcctgctggtccaccagatcgctgaggagctgggcctcgttcatgagagc
agaggcgagggcggcggcaggtgcatcaccgtctcccggcccgtggcattggaaccagtc
gaggagccgacgcaggaggaaacccaagaggaagaaccagctcctcctctgcagagtgag
ccgccaccatcccaaccgttagtagatctgaagacgatacatctggagagaatgcaaagg
gagcagcagaagagggaggaaaacgtccagcaaaaaaagcaacagaactgcaaccctgca
gctcagggagcaaagaagtctaaaggaaagaacaaaacgaaggcaggggcctgtgacatc
gctgctgccgccgttccagatgatgactttgatgctctcatcagcgctgttgtgaaggcg
gacagtgtttgcagttttgtgaaatgcaaagcatctgtgttaacactcggccagctttgc
atcttctgcaaccggcagttctgtctcagtcatcacataccagaggttcatggctgtgga
gataaggcaaagtctcacgctcggatgagaataagcaaagaaggggttctttatgccggg
agtgggaagaaagacaaatcgttggaccctaataagaaagtgtacctacaaagaaaactg
gactctaagctgaaagatatggcatcacaaaggaaaccaaagaacaaggagaaggacact
taa
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