Xiphophorus maculatus (southern platyfish): 102221072
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Entry
102221072 CDS
T02923
Name
(RefSeq) collagen alpha-1(III) chain-like
KO
K06237
collagen type IV alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
xma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102221072
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102221072
09142 Cell motility
04820 Cytoskeleton in muscle cells
102221072
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xma04147
]
102221072
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102221072
Exosome [BR:
xma04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102221072
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102221072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102221072
NCBI-ProteinID:
XP_023206688
LinkDB
All DBs
Position
18:1360070..1391576
Genome browser
AA seq
1674 aa
AA seq
DB search
MASPAAARRRIPRLLVRLLVLGALLLLANGKLVCHCTGKSRCHCEGVKGQKGEAGYTGDP
GLPGVMGFPGSEGHLGSPGEKGNPGNAGIVGIKGSRGPPGTPGFPGPPGLPGLPGHEGPM
GQPGLPGCNGTKGEAGYRGVPGPSGPPGPRGAPGPQGMKGDSVVIPLSQEIKGAAGPQGP
TGKKGQSGHGGEPGEPGRPGAHGLPGRRGSAGIEGEKGQEGSSPTSPGPQGGKGDRGPPG
IPGMQGIKLFAEGPKELKGEPGEVGQKGFPGLPGEPGSLGAKGEKGDRGEPGSLGKPGKT
GLLGELGQPGDPGEFGFIGPPGVDGAAGEKGDRGPPGPPGQTISNYISVKGQRGFPGPFG
PAGFLGIQGPIGFPGLKGESGEASNGPPGSPGPTGSGGPKGEPGPPGLVVTGPPGLTGAP
GPLGLQGEPGEPGIPNMDIVGQGVLGTTGSKGSQGPPGDKGAVGEKGQKGQVCIDCHFQA
GPPGPQGPPGAPGQNGLPGAAGSPGPAGNKGFKGAAGPPGEQGPRGPQGSPGAPGPPGEP
GSNPLPGQKGEAGDQGDAGLRGKAGQLGYSGPPGPKGETGQKGNPGLQGSKGHRGLPGPS
GARGATGPPGPPGRSRPGRPGPMGPKGANGYMGDRGAPGPRGEKGSKGNIWNIPGEPGPK
GSRGQPGETGPEGEKGRLGLRGCTGPKGQKGNDGFSHKGNRGNVGSKGVKGSRGEPGFPC
YGMKGRVGPPGPPGPVGLKGNRGFGLPGEAGKPGPRGQDACEGPPGDPGPPGLPGVQGPA
GQDGCQGPKGNRGVDGEPGSTGPPGPCVPGCPGPPGLRGPAGPIGPTGTKGPPGLKGDPG
THCPRVPGLRGPPAPPGPDGVPGLAGEVGPKGWRGNPGEPGGPGPRGDMGVPGPMGCPGN
HGPPGTCGEPGPKGQKGGDGSRGSQGPPGEPGDKGGTGPKGFPTVIRTTGNPGDSGFPGP
RGFTGEKGQGGPPGNRGPKGLDGKSGETGPPGCPGDPGRDGERGPCGFTGPPGDKGCTGR
PGDPGEKGATGTNGLPGSDGGSGKPGDKGRKGEAGFGWGAKGCKGMKGIPGHPGPSGPKG
PGGPAGDVGPLGPCGPCGFVGSKGPPGSKGSPGRTGEKGWDGPPGNCGPPGPPGNPGCWG
SPGAPGPLGPKGNQGRDGIPGPDGEKGDMGSCVPGPKGPTGRRGPPGCVGDRGPLGCCGP
PGPPGPAGDPGYKGAKGPPGPPGCAGKKGGECIDGTKGYKGFPGPKGPKGPKGPSGPPGP
PGPGYKGHKGVKGEPGPPGPPGPIGDLGPCGPPGPWGPPGYPGEKGYRGPVGAKGPIGME
GEKGPPGNPGPGGPAGRIGNPGPSGKDSYFPVQLVSGDPGEEGTLGQVGGVGSPGFPGLR
GAFGSKGSSGAPGWTGTPGRDGLRGEDGETGRIGQKGANGERGRVGAKGPPGEPGEPGEP
GAGPPPRRNGFLFSRHSQDSAAPACPAQSTLIFRGYSLLFINGYSRAHGQDLGTVGSCLQ
RFSTAPFLICETGEECRYAERNDFSYWLSNIRSSTNQTDPEAALESKISKCSVCESEANV
IAIHSQTSAVPPCPVDWQSLWTGFSFVMETGVGAEGSGQPLVSPGSCLENFQGMPFMECS
GSSGTCKYDNSLYSYWLAALDPDNMFRRPSSWILPGNNPDNISRCRVCMKIMQM
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccggcggctgcgaggcggaggatcccccgcctgctggtccggctgctggtc
ctcggcgcgctgctgctgctggccaacggcaaactggtctgtcactgcaccgggaagtcc
cgctgtcactgcgagggggtcaaaggtcaaaagggagaagcaggatacacaggagaccca
ggacttcctggagtgatgggatttcctggaagcgaaggtcacctagggtcaccaggagaa
aagggtaacccgggaaacgcaggcattgtaggaattaagggctctcggggacctccagga
acaccaggttttccaggacctccaggtctcccagggcttcctgggcacgaagggccaatg
ggtcaacccgggctcccaggatgcaacgggacaaaaggggaggccggctaccgaggggtt
cctggaccttcaggaccgccgggaccacgaggggccccggggccacaaggcatgaaggga
gactcggtcgtgattcccctcagtcaggaaataaaaggagcagcgggaccacaagggcca
accggcaaaaaggggcaaagcggacatggaggagaaccgggcgaaccgggacggcccgga
gcccatggacttcctggaagacgaggatctgcaggaattgaaggagaaaagggtcaggaa
ggttccagtccgacgagtcccggtccgcagggagggaagggcgatcgcggccctccaggg
atccccgggatgcagggcatcaaactcttcgctgaaggacccaaagagctgaagggcgag
ccgggcgaagtggggcagaaaggtttccccggtcttcctggggagccggggagcctgggg
gcgaaaggagagaagggtgacagaggagaacccggctcactgggaaaaccagggaagacg
ggattactgggagaactgggacagccgggcgaccccggagagttcggcttcatcggcccg
cccggcgtcgacggcgccgcgggagaaaaaggcgaccgagggcctccaggtcccccagga
cagaccatctctaattacatatccgtgaagggccagcgaggtttccccgggccctttgga
cccgccgggttcctcgggattcaaggtccgatcgggttcccgggactgaagggcgagtca
ggcgaggcctccaacggaccgccaggttctcctggtccaactggctcagggggtcccaaa
ggggaaccaggaccgccgggcctggtggttaccggaccgccaggattgaccggagcccca
ggacctcttggacttcagggagaaccaggagagcctggaataccaaacatggacatcgta
ggacagggtgttcttggtacgacaggttcaaaaggctctcaaggccctccaggggacaaa
ggggcggttggggaaaagggtcagaaagggcaggtttgtatagactgccattttcaggct
ggtcctcctggacctcagggaccaccaggggcgccaggtcagaacgggttgccaggtgcg
gctggatctccaggaccagcaggtaataaaggcttcaaaggagccgcaggcccacctgga
gaacagggcccccggggcccccagggctccccgggggccccggggcctccaggcgagccg
gggtcaaaccctctgccggggcagaagggggaggccggggaccagggcgatgcggggctg
cggggaaaggcggggcagctcgggtactcaggaccgccgggtcccaaaggcgaaacggga
cagaaaggaaacccggggcttcaggggtcaaaaggtcaccggggcctgccgggcccctct
ggtgccagaggagcgacggggccaccgggcccaccgggccgcagccgtccgggtcgtcca
ggaccgatggggcccaaaggagctaacggctacatgggagaccgtggagcaccgggcccc
agaggagagaaaggctctaaggggaacatctggaacattccaggagaaccgggaccgaaa
ggctccagaggacagccgggggaaaccggacctgaaggtgagaaaggacgtctgggtctc
cgaggatgtactggtccaaagggtcaaaagggcaatgacggtttctctcacaagggtaac
cggggcaacgtggggtcaaaaggagtcaaggggtccagaggagagccagggttcccctgt
tatggcatgaaggggcgagtggggccgcccggccccccggggcccgtcggcctaaagggg
aacagaggttttgggctgccgggtgaggcgggtaaaccaggccctcgggggcaggatgcc
tgtgaaggacctccgggcgatccgggaccgccgggactgccgggagttcagggacctgca
ggacaagatggctgccaggggcccaaaggtaaccgaggcgttgatggggaacctggttcc
acgggtccacctgggccctgtgtccccggatgtccagggcctccaggactgcgaggtcca
gcgggtccaattggacccacaggaacgaaggggccgccgggtctgaagggagatcctggg
acccactgccccagagtccccgggctcagagggccaccggcgccaccgggacccgatgga
gttccagggctggccggggaagtgggacccaaaggctggagagggaatcccggagagcct
ggaggcccagggccgagaggagacatgggtgttccagggccgatggggtgtcctggaaac
cacggaccgcctgggacctgcggggaaccgggaccaaaaggtcagaagggtggagatggt
tcaagaggttctcagggacctccaggagagccaggggacaaagggggaactggaccaaaa
gggttcccaacagtcattaggacaacagggaatcccggagactctggatttccaggaccc
agaggtttcactggggaaaagggacaaggaggccccccagggaaccgagggccaaagggc
ctggatggaaaatctggagagactgggccgccaggatgtcctggagatccaggtagagat
ggagagagaggtccttgtggtttcactggacccccaggggacaagggatgcactggtaga
ccaggtgatccaggtgaaaaaggtgcaacgggaaccaatgggctccctggttcagatgga
gggtcagggaaacccggggataagggacgtaaaggagaagcaggttttggatggggagct
aaaggctgtaaaggaatgaaggggattcctggacatccaggaccttcaggtccaaaagga
ccaggaggaccagctggagacgttggccctctggggccctgcggtccttgtggatttgtg
ggatccaaagggccgcctggatccaaaggttctcctggtagaaccggtgagaaaggttgg
gacggcccgcctgggaactgtggccctccagggcctcctggaaatccaggatgctggggg
tctcctggagctcctggtccactgggacccaaaggaaaccagggccgggacgggatcccc
gggcctgacggagagaaaggagatatgggctcatgtgtacctggaccgaaggggccgaca
ggacgaagaggtccccctggatgcgtgggggacaggggcccgctgggatgctgtgggcct
cctggaccccctggacctgcaggagacccgggttacaaaggcgctaagggacccccaggg
cctcctggatgtgctgggaagaaagggggagaatgcattgatgggacaaagggatataaa
ggatttcctggacctaaaggaccgaaaggccctaagggtccgtccggtccacctggtcca
ccaggtcctggttacaaaggccataaaggcgttaaaggagaaccgggtcccccaggacca
ccgggaccaatcggtgacctcggtccttgtggacctcctggtccttgggggccgcctgga
tatcctggagaaaaaggctacagaggaccagttggagcaaagggtccaatcggtatggaa
ggggagaaaggaccgccaggtaaccccggtccaggaggaccagcaggacgaatcgggaac
ccgggaccaagtgggaaggactcatattttcctgtgcagctggtatcaggagacccaggt
gaagaaggaactctaggccaagtgggaggagtcggatcgccgggtttccctggattgagg
ggagcttttggttcaaaaggctcatctggagcaccgggctggacaggaacacctgggcgt
gacggactgagaggagaggatggagagacaggacgaatcggccagaaaggtgcgaacgga
gagcgtggcagagtgggagccaagggtcctccaggtgagccaggtgaaccaggtgagcca
ggcgccggcccgccacccaggaggaacggcttcctgtttagcagacacagccaggacagc
gccgcccctgcctgcccggcccagtccacgctcatattcagaggatactcgctgctcttc
atcaacggctacagccgcgctcacggacaggacctgggaacggtcggcagctgcctgcag
cgtttcagcaccgctcccttcctgatctgtgagactggagaggaatgtcgatacgctgag
aggaacgacttttcctactggctgtccaacatcaggagctcgacaaaccagaccgaccca
gaggcggcgctggagtccaagatcagcaagtgttcggtgtgcgagtctgaagccaatgtg
atcgccatccacagccagaccagcgccgtccccccctgccctgtggactggcagtcgctc
tggaccggattctcctttgtgatggagacgggtgtaggcgccgagggctcgggtcagcct
ctggtttctcccggatcctgcctggaaaacttccaaggaatgccgttcatggagtgcagc
ggcagctcaggaacctgcaagtacgacaacagcctgtacagctactggctggctgctctg
gaccctgacaacatgttcaggaggcccagcagctggatccttccagggaacaacccagac
aacatcagccgctgcagagtctgcatgaagatcatgcagatgtga
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