Xiphophorus maculatus (southern platyfish): 102221072
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Entry
102221072 CDS
T02923
Name
(RefSeq) collagen alpha-1(III) chain-like
KO
K06237
collagen type IV alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04382
Cornified envelope formation
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
xma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102221072
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102221072
09142 Cell motility
04820 Cytoskeleton in muscle cells
102221072
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102221072
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xma04147
]
102221072
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102221072
Exosome [BR:
xma04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102221072
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102221072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102221072
NCBI-ProteinID:
XP_023206688
LinkDB
All DBs
Position
18:1360070..1391576
Genome browser
AA seq
1674 aa
AA seq
DB search
MASPAAARRRIPRLLVRLLVLGALLLLANGKLVCHCTGKSRCHCEGVKGQKGEAGYTGDP
GLPGVMGFPGSEGHLGSPGEKGNPGNAGIVGIKGSRGPPGTPGFPGPPGLPGLPGHEGPM
GQPGLPGCNGTKGEAGYRGVPGPSGPPGPRGAPGPQGMKGDSVVIPLSQEIKGAAGPQGP
TGKKGQSGHGGEPGEPGRPGAHGLPGRRGSAGIEGEKGQEGSSPTSPGPQGGKGDRGPPG
IPGMQGIKLFAEGPKELKGEPGEVGQKGFPGLPGEPGSLGAKGEKGDRGEPGSLGKPGKT
GLLGELGQPGDPGEFGFIGPPGVDGAAGEKGDRGPPGPPGQTISNYISVKGQRGFPGPFG
PAGFLGIQGPIGFPGLKGESGEASNGPPGSPGPTGSGGPKGEPGPPGLVVTGPPGLTGAP
GPLGLQGEPGEPGIPNMDIVGQGVLGTTGSKGSQGPPGDKGAVGEKGQKGQVCIDCHFQA
GPPGPQGPPGAPGQNGLPGAAGSPGPAGNKGFKGAAGPPGEQGPRGPQGSPGAPGPPGEP
GSNPLPGQKGEAGDQGDAGLRGKAGQLGYSGPPGPKGETGQKGNPGLQGSKGHRGLPGPS
GARGATGPPGPPGRSRPGRPGPMGPKGANGYMGDRGAPGPRGEKGSKGNIWNIPGEPGPK
GSRGQPGETGPEGEKGRLGLRGCTGPKGQKGNDGFSHKGNRGNVGSKGVKGSRGEPGFPC
YGMKGRVGPPGPPGPVGLKGNRGFGLPGEAGKPGPRGQDACEGPPGDPGPPGLPGVQGPA
GQDGCQGPKGNRGVDGEPGSTGPPGPCVPGCPGPPGLRGPAGPIGPTGTKGPPGLKGDPG
THCPRVPGLRGPPAPPGPDGVPGLAGEVGPKGWRGNPGEPGGPGPRGDMGVPGPMGCPGN
HGPPGTCGEPGPKGQKGGDGSRGSQGPPGEPGDKGGTGPKGFPTVIRTTGNPGDSGFPGP
RGFTGEKGQGGPPGNRGPKGLDGKSGETGPPGCPGDPGRDGERGPCGFTGPPGDKGCTGR
PGDPGEKGATGTNGLPGSDGGSGKPGDKGRKGEAGFGWGAKGCKGMKGIPGHPGPSGPKG
PGGPAGDVGPLGPCGPCGFVGSKGPPGSKGSPGRTGEKGWDGPPGNCGPPGPPGNPGCWG
SPGAPGPLGPKGNQGRDGIPGPDGEKGDMGSCVPGPKGPTGRRGPPGCVGDRGPLGCCGP
PGPPGPAGDPGYKGAKGPPGPPGCAGKKGGECIDGTKGYKGFPGPKGPKGPKGPSGPPGP
PGPGYKGHKGVKGEPGPPGPPGPIGDLGPCGPPGPWGPPGYPGEKGYRGPVGAKGPIGME
GEKGPPGNPGPGGPAGRIGNPGPSGKDSYFPVQLVSGDPGEEGTLGQVGGVGSPGFPGLR
GAFGSKGSSGAPGWTGTPGRDGLRGEDGETGRIGQKGANGERGRVGAKGPPGEPGEPGEP
GAGPPPRRNGFLFSRHSQDSAAPACPAQSTLIFRGYSLLFINGYSRAHGQDLGTVGSCLQ
RFSTAPFLICETGEECRYAERNDFSYWLSNIRSSTNQTDPEAALESKISKCSVCESEANV
IAIHSQTSAVPPCPVDWQSLWTGFSFVMETGVGAEGSGQPLVSPGSCLENFQGMPFMECS
GSSGTCKYDNSLYSYWLAALDPDNMFRRPSSWILPGNNPDNISRCRVCMKIMQM
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccggcggctgcgaggcggaggatcccccgcctgctggtccggctgctggtc
ctcggcgcgctgctgctgctggccaacggcaaactggtctgtcactgcaccgggaagtcc
cgctgtcactgcgagggggtcaaaggtcaaaagggagaagcaggatacacaggagaccca
ggacttcctggagtgatgggatttcctggaagcgaaggtcacctagggtcaccaggagaa
aagggtaacccgggaaacgcaggcattgtaggaattaagggctctcggggacctccagga
acaccaggttttccaggacctccaggtctcccagggcttcctgggcacgaagggccaatg
ggtcaacccgggctcccaggatgcaacgggacaaaaggggaggccggctaccgaggggtt
cctggaccttcaggaccgccgggaccacgaggggccccggggccacaaggcatgaaggga
gactcggtcgtgattcccctcagtcaggaaataaaaggagcagcgggaccacaagggcca
accggcaaaaaggggcaaagcggacatggaggagaaccgggcgaaccgggacggcccgga
gcccatggacttcctggaagacgaggatctgcaggaattgaaggagaaaagggtcaggaa
ggttccagtccgacgagtcccggtccgcagggagggaagggcgatcgcggccctccaggg
atccccgggatgcagggcatcaaactcttcgctgaaggacccaaagagctgaagggcgag
ccgggcgaagtggggcagaaaggtttccccggtcttcctggggagccggggagcctgggg
gcgaaaggagagaagggtgacagaggagaacccggctcactgggaaaaccagggaagacg
ggattactgggagaactgggacagccgggcgaccccggagagttcggcttcatcggcccg
cccggcgtcgacggcgccgcgggagaaaaaggcgaccgagggcctccaggtcccccagga
cagaccatctctaattacatatccgtgaagggccagcgaggtttccccgggccctttgga
cccgccgggttcctcgggattcaaggtccgatcgggttcccgggactgaagggcgagtca
ggcgaggcctccaacggaccgccaggttctcctggtccaactggctcagggggtcccaaa
ggggaaccaggaccgccgggcctggtggttaccggaccgccaggattgaccggagcccca
ggacctcttggacttcagggagaaccaggagagcctggaataccaaacatggacatcgta
ggacagggtgttcttggtacgacaggttcaaaaggctctcaaggccctccaggggacaaa
ggggcggttggggaaaagggtcagaaagggcaggtttgtatagactgccattttcaggct
ggtcctcctggacctcagggaccaccaggggcgccaggtcagaacgggttgccaggtgcg
gctggatctccaggaccagcaggtaataaaggcttcaaaggagccgcaggcccacctgga
gaacagggcccccggggcccccagggctccccgggggccccggggcctccaggcgagccg
gggtcaaaccctctgccggggcagaagggggaggccggggaccagggcgatgcggggctg
cggggaaaggcggggcagctcgggtactcaggaccgccgggtcccaaaggcgaaacggga
cagaaaggaaacccggggcttcaggggtcaaaaggtcaccggggcctgccgggcccctct
ggtgccagaggagcgacggggccaccgggcccaccgggccgcagccgtccgggtcgtcca
ggaccgatggggcccaaaggagctaacggctacatgggagaccgtggagcaccgggcccc
agaggagagaaaggctctaaggggaacatctggaacattccaggagaaccgggaccgaaa
ggctccagaggacagccgggggaaaccggacctgaaggtgagaaaggacgtctgggtctc
cgaggatgtactggtccaaagggtcaaaagggcaatgacggtttctctcacaagggtaac
cggggcaacgtggggtcaaaaggagtcaaggggtccagaggagagccagggttcccctgt
tatggcatgaaggggcgagtggggccgcccggccccccggggcccgtcggcctaaagggg
aacagaggttttgggctgccgggtgaggcgggtaaaccaggccctcgggggcaggatgcc
tgtgaaggacctccgggcgatccgggaccgccgggactgccgggagttcagggacctgca
ggacaagatggctgccaggggcccaaaggtaaccgaggcgttgatggggaacctggttcc
acgggtccacctgggccctgtgtccccggatgtccagggcctccaggactgcgaggtcca
gcgggtccaattggacccacaggaacgaaggggccgccgggtctgaagggagatcctggg
acccactgccccagagtccccgggctcagagggccaccggcgccaccgggacccgatgga
gttccagggctggccggggaagtgggacccaaaggctggagagggaatcccggagagcct
ggaggcccagggccgagaggagacatgggtgttccagggccgatggggtgtcctggaaac
cacggaccgcctgggacctgcggggaaccgggaccaaaaggtcagaagggtggagatggt
tcaagaggttctcagggacctccaggagagccaggggacaaagggggaactggaccaaaa
gggttcccaacagtcattaggacaacagggaatcccggagactctggatttccaggaccc
agaggtttcactggggaaaagggacaaggaggccccccagggaaccgagggccaaagggc
ctggatggaaaatctggagagactgggccgccaggatgtcctggagatccaggtagagat
ggagagagaggtccttgtggtttcactggacccccaggggacaagggatgcactggtaga
ccaggtgatccaggtgaaaaaggtgcaacgggaaccaatgggctccctggttcagatgga
gggtcagggaaacccggggataagggacgtaaaggagaagcaggttttggatggggagct
aaaggctgtaaaggaatgaaggggattcctggacatccaggaccttcaggtccaaaagga
ccaggaggaccagctggagacgttggccctctggggccctgcggtccttgtggatttgtg
ggatccaaagggccgcctggatccaaaggttctcctggtagaaccggtgagaaaggttgg
gacggcccgcctgggaactgtggccctccagggcctcctggaaatccaggatgctggggg
tctcctggagctcctggtccactgggacccaaaggaaaccagggccgggacgggatcccc
gggcctgacggagagaaaggagatatgggctcatgtgtacctggaccgaaggggccgaca
ggacgaagaggtccccctggatgcgtgggggacaggggcccgctgggatgctgtgggcct
cctggaccccctggacctgcaggagacccgggttacaaaggcgctaagggacccccaggg
cctcctggatgtgctgggaagaaagggggagaatgcattgatgggacaaagggatataaa
ggatttcctggacctaaaggaccgaaaggccctaagggtccgtccggtccacctggtcca
ccaggtcctggttacaaaggccataaaggcgttaaaggagaaccgggtcccccaggacca
ccgggaccaatcggtgacctcggtccttgtggacctcctggtccttgggggccgcctgga
tatcctggagaaaaaggctacagaggaccagttggagcaaagggtccaatcggtatggaa
ggggagaaaggaccgccaggtaaccccggtccaggaggaccagcaggacgaatcgggaac
ccgggaccaagtgggaaggactcatattttcctgtgcagctggtatcaggagacccaggt
gaagaaggaactctaggccaagtgggaggagtcggatcgccgggtttccctggattgagg
ggagcttttggttcaaaaggctcatctggagcaccgggctggacaggaacacctgggcgt
gacggactgagaggagaggatggagagacaggacgaatcggccagaaaggtgcgaacgga
gagcgtggcagagtgggagccaagggtcctccaggtgagccaggtgaaccaggtgagcca
ggcgccggcccgccacccaggaggaacggcttcctgtttagcagacacagccaggacagc
gccgcccctgcctgcccggcccagtccacgctcatattcagaggatactcgctgctcttc
atcaacggctacagccgcgctcacggacaggacctgggaacggtcggcagctgcctgcag
cgtttcagcaccgctcccttcctgatctgtgagactggagaggaatgtcgatacgctgag
aggaacgacttttcctactggctgtccaacatcaggagctcgacaaaccagaccgaccca
gaggcggcgctggagtccaagatcagcaagtgttcggtgtgcgagtctgaagccaatgtg
atcgccatccacagccagaccagcgccgtccccccctgccctgtggactggcagtcgctc
tggaccggattctcctttgtgatggagacgggtgtaggcgccgagggctcgggtcagcct
ctggtttctcccggatcctgcctggaaaacttccaaggaatgccgttcatggagtgcagc
ggcagctcaggaacctgcaagtacgacaacagcctgtacagctactggctggctgctctg
gaccctgacaacatgttcaggaggcccagcagctggatccttccagggaacaacccagac
aacatcagccgctgcagagtctgcatgaagatcatgcagatgtga
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