KEGG   Xiphophorus maculatus (southern platyfish): 102221545
Entry
102221545         CDS       T02923                                 
Symbol
copb2
Name
(RefSeq) coatomer subunit beta'
  KO
K17302  coatomer subunit beta'
Organism
xma  Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:xma00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xma04131]
    102221545 (copb2)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xma04147]
    102221545 (copb2)
Membrane trafficking [BR:xma04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    102221545 (copb2)
Exosome [BR:xma04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   102221545 (copb2)
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_TEP1_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_IFT122_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SCAP WD40_RFWD3 PEP5_VPS11_N Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_LRRK2 WD_LRWD1 Beta-prop_IP5PC_F
Other DBs
NCBI-GeneID: 102221545
NCBI-ProteinID: XP_023207619
LinkDB
Position
18:complement(9342420..9353266)
AA seq 1190 aa
MPLRLDIQRRLTARSERVKSADLHPTEPWMVLSLYTGTVVVWNHETQVIVKSFELCGLPV
RVAKFVARKHWIITGADDMQIRVFNYNTLDRVFMFEAHCDYIRCVAVHPTQPFVLTSSDD
MLIKLWDWDRKWTCCQVFEGHAHYVMQVVFNPKDNNQFASASLDRTIKVWQLGSKSPNFT
LEGHEKGVNCIDYYNGGDKPYLISGADDNLVKIWDYQNKTCVQTLESHVQNVTCVCFHPE
LPVILTGSEDGTVRVWHSNTYRLENTLNYGMERVWCICGQSGSNNIALGYDEGSIIIKLG
REEPAMSMDSSGKIMWARHSEVQQANLKTLGESEIQDGEKLPLGAKDIGSCEIYPQTIQH
SPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSQYATREGNSVVKIFKNFKE
KKTFNPDFGADGIFGGFLLGVRSTSGLAFYDWESSSLIRRVEILPKHMFWSDSGELVCIA
TEESFFVLRYLTERVSAAQESKETLTEDGIEDAFEVLGEVQEVVKTGLWVGDCFIYTSSM
NRLNYYVGGEIITIAHLDRTMYLLGYIPKDDRLYLGDKELNIISYSLLLSVLEYETAVMR
KDFTTADRVLPTIPMEQRTRVAHFLEKQGFRQQALAVSTDLDHKFELALQLGELRMAHEL
ALEAESEHKWKQLAEVASTKGQFSLAQECLHQAQDYGGLLLLATASGSADMVGKLAEGAE
KDGKTNVAFLTYFMQGRTDKCLELLIKTDRLPEAAFLARTYMPSQVSRVVKLWKENMSKV
NQKAADALADPDQYSNLFPGLQQTMLAEQYLKETHVGVRPAAEYPLIMSNKDRDVLEESK
GFITKGKITEPGEAEGSMNESPAVASEATVMEEPIPIKHEPPADPVTVTEKIFSFPEEAP
LSVFATKDHVEPNQAQSECRVKGENIMKSETLLIAEERLIQKPCTEVPAKDSEAVQSSPV
EGVRLSDEVADQGVASAAEAQPAITVSEEEETQTADDVLISTDLKANSVIASESAALEET
SRPDQQETDTIPLVAIATEETPIAKLPVAVEELVSLEPTERSLLDVLSGTGQAISDLILD
SSLDSDEDASAALKPVAVCEDEQEQEEKTAEPPAETEDGSEVGSLPEAEPEGSHDTAEVN
VAEQEAGSEASQDLSEELEETINHEDLDDLDLDSFELEDIDTLDMNLLDE
NT seq 3573 nt   +upstreamnt  +downstreamnt
atgcctctgaggttggacatccagcggaggctgacagctcgttcagaaagagtgaagagc
gcggacctgcaccccactgagccgtggatggtgctcagcctctacaccggcaccgttgtc
gtctggaaccatgaaacacaggtaattgttaaatcctttgagctgtgcggtctgcctgtt
agagtggccaagtttgtagccaggaaacactggatcattactggagcagatgacatgcag
atccgtgtgttcaactacaacacgctagacagggtcttcatgtttgaagcccactgtgac
tacatccgctgcgtcgctgtgcaccccacgcagccctttgtcctcaccagcagcgatgac
atgctgatcaaactgtgggactgggacagaaagtggacgtgctgtcaagtgtttgaggga
catgcacactatgtcatgcaggtcgtcttcaaccctaaagacaacaaccagtttgccagt
gcctctctagacagaaccattaaggtgtggcagttgggctccaagtctcccaatttcact
cttgaaggtcacgagaaaggagtgaactgcattgattactataatggaggagacaagccc
taccttatatcaggagcagatgataatcttgtgaagatctgggattatcagaacaaaacg
tgtgttcagaccctggagagtcatgtgcagaatgtgacctgtgtctgcttccaccctgaa
ctgcctgtcattctcacaggatctgaggatggcactgtcagagtttggcactccaacacc
tacagacttgaaaacacacttaattacgggatggaacgagtgtggtgtatatgtgggcag
tctggctccaacaatatagctctgggctatgatgaaggcagcatcatcattaagctgggt
cgggaggagccggccatgtccatggactccagtgggaaaatcatgtgggcccgtcactct
gaggtgcagcaggccaacctgaagacgctgggagagtcggagattcaggacggagagaag
ctcccacttggtgccaaagacataggcagctgtgagatttacccacaaaccattcaacac
agccccaatggcagatttgtagtggtgtgtggagatggggaatatatcatctacactgcg
atggccttgaggaacaaaagctttggctctgctcaggagtttgtctgggcacacgactcc
tcacagtatgccacgagggagggcaatagcgtggtgaaaatatttaaaaactttaaagag
aagaagactttcaaccctgattttggggctgatggcatctttggtggcttcttactggga
gtgaggtcaaccagcggactggctttttatgactgggaaagctccagtttgatccgccgt
gttgagatcctgcctaagcatatgttctggtctgactctggggagctggtgtgtattgct
acagaagagtccttctttgtgttgcgctacctgacagagcgagtgtcagcagcacaggag
tctaaagaaacgctgacagaggatgggatagaagatgcttttgaggtactgggtgaggtc
caggaggttgtaaagacaggtctgtgggtcggagactgcttcatctataccagctccatg
aacagactcaactactatgttggaggagagatcataactattgctcacctggacaggacc
atgtatctgctgggctacatcccaaaagacgaccgactctatctaggagacaaggagctc
aacatcatcagttactccctgctgctgtctgtgctggaatatgagacagctgtcatgagg
aaagatttcaccacggctgacagggtccttcccacaataccaatggagcagaggaccagg
gtcgcccacttcctggagaaacaggggttcagacagcaggcgctggctgtgtccactgac
ctggatcacaagtttgagcttgctctgcagctgggggagctgaggatggcgcatgaactg
gcactagaggcagagtctgagcataaatggaagcagttggccgaagtcgcctctacaaag
gggcagttcagcctggctcaggaatgtctgcaccaagctcaggattacggtggattactt
ctgctggcaaccgcctcaggcagcgcagacatggtagggaaactggctgagggagcggag
aaggatgggaagaccaacgtggctttcctcacctacttcatgcaaggaagaactgacaaa
tgtttggagctgcttattaaaactgatcgattgccagaggctgctttcctggcaagaaca
tacatgcccagccaagtctcaagggtggtgaagctgtggaaggagaacatgtccaaggtt
aaccagaaggcagcagatgcactggctgacccagatcagtacagcaacctgttccctggc
ctccagcaaactatgctggctgagcagtacctgaaggagactcatgttggggtcagacct
gctgcagaataccccctcatcatgtcaaacaaggaccgtgatgttctggaggagtccaaa
ggttttatcaccaaaggaaagattactgagccaggggaggcagagggaagcatgaatgaa
agccctgctgttgcttcagaagcaacagtaatggaagaacccattccaataaaacatgag
cctcctgctgatcctgttacagtgacagagaaaatatttagttttccagaggaagctcct
ctgtctgtctttgccactaaagaccatgttgagccaaaccaagcacagtctgagtgtcga
gttaaaggggaaaacattatgaaatcagagactttacttattgcagaggaacgcttgatc
cagaaaccctgcactgaggttcctgccaaagactcggaggccgtacagtccagtccagtg
gaaggtgtacgtttatctgatgaggtggctgatcagggcgtagcttcagcagctgaagct
cagccagctatcacggtatctgaagaggaagaaacacaaacagcagatgatgtgctaatt
agcacggatctaaaagccaattctgtaattgcatcagaatctgcagcattagaggaaaca
tccaggcctgatcaacaggaaacagacaccattcccttggttgctatagcaacagaagaa
actccaattgcgaagctacctgtagcagtagaggagctcgtctctttagaaccaacagaa
cgttccctgctggatgttctatcaggcacaggccaggctatttcagatctgatcctcgat
tcatcgctagactcagatgaagatgcatcagcggcgttgaagcctgtcgctgtgtgtgag
gatgagcaagaacaagaggagaaaactgcagaacctccagcagagacggaggatgggtcg
gaagtgggcagtcttcctgaggctgaaccagaaggatcacacgacacagcagaggtgaac
gtggcagagcaggaagcaggctctgaagcatcacaggacctatcagaagaactcgaggaa
acaatcaaccatgaggaccttgatgatctggatctggacagttttgaactggaggacatc
gacacattagacatgaatctgctggatgaatag

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