Xiphophorus maculatus (southern platyfish): 102222158
Help
Entry
102222158 CDS
T02923
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102222158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xma03021
]
102222158
03036 Chromosome and associated proteins [BR:
xma03036
]
102222158
Transcription machinery [BR:
xma03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102222158
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
102222158
Chromatin remodeling factors
BAF complex
102222158
PBAF complex
102222158
GBAF(ncBAF) complex
102222158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
102222158
NCBI-ProteinID:
XP_005797574
Ensembl:
ENSXMAG00000007030
LinkDB
All DBs
Position
5:10216456..10234455
Genome browser
AA seq
1666 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPNAMLGPSPGPSPGSSHSMMGPSPGPPSSGHSQPVPS
GYGPENMHPLHKPMEGMHEKSLCDDSRFSQMKGLSMRQGGHSGMGPPPSPLDQHSQGYHS
PLGGSDHSSPVASNGPPSGPLMPSTSSSSSSAGSGSASASLDGPNVDQHSLGPNNRSGPP
GNSGPGPSPGPSLGSSVPSLGSGLDGSGPGGPGGPTPFNQNQLHQLRAQIMAYKMLARGQ
PLPDHLQMAVQGKRPMPGMQQQQPMSSLVSGTSAGPGGGPTGPGSGPGPMGSSYSRPHGM
MGPNMPPPGPSGTPVGMQGPNPNGPSKSWPEGPMVNAAAPSNAPQKLIPPQPTGRPSPAP
PSVPPAASPVMPPQTQSPGQPAQPPPMMPYHAKQNRITPIQKPCGLDPVEILQEREYRLQ
ARIAHRIAELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRDTALETALD
AKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTG
KMQKLTKAVSTYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ
QTDEYVANLTELVRAHKAAQALKEKKKKKKKKKKLENAEGQTPALGPDGEPLDETSQMSD
LPVKVIHVDSGNILTGVDAPKAGQLETWLEMNPGYEVAPRSDSEDSEEEEEEEEEEEEPQ
PSSAPVEEKKKITDPDSEDVSEVDVRHIIENAKQDVDDEYSGAAFARGLQSYYSVAHAVT
EKVEKQSTLLINGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH
KRLNGPYLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTT
YEYIIKDKQVLAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLP
ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR
LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTI
MQLRKICNHPYMFQQIEESFSEHLGFSGGIVQGPDLYRASGKFEVLDRILPKLRATNHKV
LLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAG
GLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK
YKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEVWGQELVNEEDEVPDDETVNQ
MIARSEEEFEQFMRMDLDRRREEARNPRRKPRLMEEDELPTWIMKDDAEVERLTCEEEEE
KMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGTLEEMEEEVRHKKTTRKRKRDRDLDLPGP
SSSSGSRGRGDRDDDGKRQRKRGRPPAEKLSPNPPGLTKKMRKIVDAVIKYKDSTSGRQL
SEVFIQLPSRKELPEYYELIRKPVDFRKIKERIRSHRYRSLGDLERDVMLLFQNAQTFNL
EGSLIYEDSIVLQSVFTSLRQKIEKEEESEGEESDEEEEEQEDGSESESRSVKVKIRLSR
KDKGGDRGKGRSRRTGRTRAKPVVSDDDSEDEQEEERSASGTDEEA
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacacctgatcctcccatggggggtaccccccgtccgggtccatcacccggtcct
ggcccctcccccaatgctatgcttggccccagcccgggtccttcccctggctcctctcac
agcatgatggggcccagccccggtcctccttcctcgggacactcccagccagtaccctct
ggatatggccccgaaaacatgcaccctttgcacaaacccatggagggcatgcatgagaag
agcttgtgtgatgacagtcgcttcagtcagatgaagggactttcgatgagacagggcggg
cacagtggtatgggccctccacccagccctctggaccaacactcacaaggctaccactct
ccacttggtggctcggaccactccagccctgtcgcttcaaatggccccccatccggtcct
cttatgccatcaacctcctcctcatcatcttctgcaggttctggttctgcttcagcctct
cttgatggccccaatgtagatcaacattccttggggcctaataaccggtctggacctccg
gggaattctggacctggccctagccctgggcctagccttggctccagcgttcccagcctc
ggttctggccttgatggtagtggccctggaggacctggtgggccgactccctttaaccaa
aaccagcttcaccaactcagagcccagatcatggcgtataagatgctcgcccgaggacag
cccctgccggatcatctccaaatggctgttcaaggaaaaaggccgatgccagggatgcag
cagcagcagcccatgtccagtctggtttctggaactagtgcaggaccaggaggtggtcca
acaggacccggatcagggcctggacctatgggctcaagctacagtcggcctcatggcatg
atgggtcccaacatgcctccccctggtccttcagggaccccagttggcatgcaaggaccg
aatcccaatggaccctccaagtcatggcctgaaggccccatggtgaatgcagcggccccc
tccaacgcaccccaaaaattgatccctcctcagcccacaggcaggccttctcctgctccc
ccatcagttcccccagctgcttcccctgtaatgcccccacagacccagtcccctggtcag
cctgctcagcctcctcccatgatgccttaccacgccaagcagaaccgcattacccccatc
cagaaaccctgtggtctcgaccctgtagagattctgcaagagagggagtacaggttgcag
gctcgtattgctcatcgcattgctgaattggagaacctgcctggttctttggcgggtgat
ctacgtaccaaagctacaatagagctcaaagctcttcgtttgctgaacttccagagacag
ctgcgtcaagaagtagtggtgtgcatgcgacgtgacacagctctcgagactgctctggat
gccaaagcctacaagcggagcaagcgccagtctctgcgggaggcccgcatcacagagaaa
ctggagaaacagcaaaagattgagcaagagcgcaaacgcagacaaaaacatcaggagtac
ctcaacagcattctccagcatgccaaagacttcaaggagtatcaccgctcagtcacggga
aagatgcagaagctgaccaaagccgtgtccacctaccacgccaacacggagcgtgagcag
aagaaggagaatgagcgcattgagaaagaacggatgaggaggcttatggctgaagatgaa
gagggctaccgtaaactgattgaccagaagaaggataagcgcctggcctatttgctgcag
caaactgacgagtatgtcgctaacctcactgagctggtacgagcccacaaagctgcacag
gccctcaaggagaagaaaaagaagaaaaagaaaaagaagaagttggagaatgcagagggt
caaactcctgctcttgggccggatggagagcccctggatgaaactagccagatgagtgac
ctgcctgtaaaggtcatccatgtggacagcggcaatatcttgacgggcgtggatgctccg
aaggctggacagttggaaacatggctggagatgaaccctggttatgaggtcgctccccgc
tcagacagtgaagacagtgaggaggaggaagaagaagaggaagaagaagaggagcctcaa
ccttcatcagctccagtggaagaaaagaagaagattacggacccagacagcgaagacgtg
tcagaagtggatgtccgacatatcattgaaaacgctaaacaggatgtggacgacgagtac
agtggtgcagcgttcgctcgagggctccagtcgtattattctgtggcccatgccgtcaca
gagaaggtggagaaacagtctactttactgataaatggacagcttaaacaatatcagatt
aaaggtctggaatggctagtttctctttacaataataatctgaatgggatcctggctgat
gagatgggtttgggaaaaaccatccagacgattgctcttatcacctacctcatggagcac
aagcggctcaacggaccctacctcatcattgtccccctctcaactttgtccaactgggtg
tatgagtttgacaagtgggcaccatcggtcgttaaagtgtcctacaaagggtctcctgct
gctagaagagcctttgtcccccagctgcgaagcggcaagtttaatgttttactcaccact
tacgagtacatcatcaaggacaaacaagtactggccaagattcgatggaagtacatgatt
gtggatgaaggccaccgcatgaagaaccaccactgtaagctgacccaggttctaaacacc
cactacctcgctccgaggagagtgttgctgaccgggacgccattgcagaacaaactacct
gaactgtgggcgctcctcaacttcctgctgcccaccattttcaagagctgcagcacattc
gagcagtggttcaacgccccgtttgcaatgactggagagaaggtggatcttaatgaagag
gagacaatcttgattattcgtcgcctgcacaaagtgctccgccccttcctgctgcgaagg
ttaaagaaagaagtggaggctcagcttccagaaaaggtggagtatgtcatcaagtgtgac
atgtcggctcttcagagggtcctgtaccggcacatgcaggccaaaggggtcctgctcact
gacggatccgagaaagacaagaagggtaaaggaggcacaaaaactctgatgaacaccatc
atgcagctgaggaagatctgtaatcatccatatatgttccagcaaattgaggaatctttc
tctgagcatttaggattctctggtggaatagtccaaggtcctgacctttatcgagcttca
ggaaagtttgaggtgctggatcgcatcctgccaaagctgagggccacaaaccacaaagtg
ctgctcttctgccagatgaccacactcatgaccatcatggaggattacttcgcctaccgc
aacttcaagtatctgcgtctggacggcacaacaaaggctgaagaccgaggaatgctgctg
aagacatttaatgaaccggggtcagagtactttatttttctgctgagcacaagagccggc
ggtctcggcctcaacctgcagtctgcagacactgtgattatttttgactcagattggaac
ccccatcaggacttacaggctcaagacagagcccatcgcatcggccagcagaacgaggtg
cgagtgctgcgcctctgcaccgtcaacagcgtggaagagaaaattctggcagccgccaag
tataaattgaatgtggaccagaaagtcatccaggccggcatgttcgatcagaaatcctcc
agccacgagcgccgggccttcctgcaggccatcctggagcacgaggagcaagacgaggtc
tggggtcaagagcttgtgaatgaggaggacgaggtgccggacgatgagaccgtcaaccaa
atgatcgccaggagcgaagaggagtttgagcagttcatgcgcatggacctggacaggcgt
cgcgaggaggctcgtaatcctcggcgaaaacctcgtctgatggaagaggacgagcttccc
acctggatcatgaaggacgatgctgaagttgagcgtctgacctgcgaagaggaggaggaa
aaaatgtttgggcgaggttctcgacagcgcaaggaggtggactacagcgattcactgaca
gagaaacagtggctcaaggcaattgaggaaggcacacttgaagagatggaggaagaagtg
cgtcacaaaaagacaacccgaaagaggaagagggaccgtgatctggatctcccaggaccc
tcgtcttcctctgggagccggggacgaggcgacagagatgatgatgggaagagacaacgg
aagaggggaagaccgccagctgagaaactctcccccaaccctccgggcctcacaaagaaa
atgaggaaaatagtggatgctgtcatcaaatataaagacagcaccagtgggcgtcagctc
agcgaggttttcatccagctgccgtctcgaaaggaactgcccgagtactacgagctgatc
cgcaagccagtggacttcaggaagatcaaggagaggattcgaagccaccgctaccgcagt
ctgggtgacctggagagagacgtcatgctcctcttccaaaacgctcagaccttcaacctg
gagggttccctgatatacgaagactccatcgtgctgcagtcagtgttcaccagcttgagg
cagaagatcgagaaggaggaggaaagcgagggagaggagagcgatgaggaggaggaagag
caggaagacggatcggagtcagaatctcgctcagtcaaagtgaaaatccgcttgagtcga
aaggataaaggtggagatcgaggaaaggggcgcagcaggcgaacaggacgcacccgggcc
aaaccggtcgtcagtgatgacgactccgaggatgaacaggaggaggagcgctcagccagc
ggcactgatgaagaggcttga
DBGET
integrated database retrieval system
