Xiphophorus maculatus (southern platyfish): 102222352
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Entry
102222352 CDS
T02923
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma00100
Steroid biosynthesis
xma01100
Metabolic pathways
Module
xma_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
102222352 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
xma01006
]
102222352 (fdft1)
Enzymes [BR:
xma01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
102222352 (fdft1)
Prenyltransferases [BR:
xma01006
]
Terpene biosynthesis
Squalene/phytoene synthase
102222352 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
GBP_C
Octopine_DH
Motif
Other DBs
NCBI-GeneID:
102222352
NCBI-ProteinID:
XP_014324711
Ensembl:
ENSXMAG00000003786
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All DBs
Position
15:complement(11863371..11870618)
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AA seq
457 aa
AA seq
DB search
MAGACCKCPASLSVLKRSLSVAPRGCGSSPPRSVLQGWRRRGDRGLQEATRPSSALRTVG
FYRQTAFLCLSCQESMSDSLRTCYVYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALD
TVEDDMTISLEKKVPMLNNFHTYLYQEEWCFTESHEKDRQVLEDFPTISLEFRNLAQEYR
DVISDICHRMGVGMAEFLEKKVGSVKEWDLYCHYVAGLVGIGLSRLFSASQLEDPEVGQD
TELANSMGLFLQKTNIIRDYLEDTQEGRAFWPKEAWSQFASRLEDLAQPEKLESALSCLN
LLVTDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSTCYNNPMVFQGVVKIRKGQ
AVTLMMEATNMRAVQTIIAQYSQEILQKVSLTDPTRDKTLHILAVIQEKSALPQPDLSCR
NHHLSPMYLSAAMLVAALSWQYLSTTAAQAQGTGDMQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcctgctgcaaatgtccggcctctctgtccgtgttgaagcgctctctctcg
gtggcgccgcgaggctgcggctcctctccccctcggtccgtcctgcagggctggaggagg
cgcggggacaggggcctgcaggaggccaccagacccagtagcgccctcagaaccgtgggt
ttctaccgacaaacagcctttctttgtctctcctgccaggagtctatgagcgacagcctg
cggacctgctacgtatatctgaatcagaccagcaggagctttgcggccgtgattcaggca
ctggacggagagctgagacatgcggtttgcatcttttacctggtgcttcgtgcactggac
acagttgaggacgacatgaccatctctttggaaaagaaggtgccaatgcttaacaatttc
cacacgtacctgtaccaggaggagtggtgcttcactgagagccatgagaaggaccgtcaa
gttctggaggatttccctacgatatcactggaatttagaaaccttgctcaggaatacaga
gacgtcatctctgatatctgccaccggatgggagtcgggatggctgaatttctggaaaag
aaggtgggatccgtgaaagagtgggacctgtactgccactacgttgccggtcttgtcggc
atcggtctgtcgcggctcttctctgcctcccagctggaggatccagaagtgggacaggac
accgagctggcaaactcaatggggctgttcctgcagaaaacaaacatcatccgagactat
ctggaagatactcaggagggacgggccttctggccaaaagaggcgtggagccagtttgcg
agtcgtctggaggatctggcccagcccgagaagctggagtcggctctgtcctgcctcaac
ctgctggtcaccgacgctctgcgtcacgtccccgacgtcatcgcctacctgtctcggctg
cgcaaccaaagcgtcttcaatttctgcgccattccacaagtgatggcaatagctaccctc
tcaacgtgctacaacaacccgatggtgtttcagggtgtggtgaagatcagaaagggacag
gctgtcaccctcatgatggaagccaccaacatgagagctgtgcagaccatcattgcccag
tacagccaagagattttacagaaggtctccctcaccgatccgacgcgggacaagacgctg
cacatcctggctgtgatccaggagaagtcggcccttcctcaacccgacctcagctgcagg
aaccaccacctgtctcctatgtacctgtcggctgccatgctggtggccgcgctgagctgg
cagtatctcagtacgacagctgcccaggcgcagggcacaggggacatgcagtga
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