KEGG   Xiphophorus maculatus (southern platyfish): 102222366
Entry
102222366         CDS       T02923                                 
Symbol
ift140
Name
(RefSeq) intraflagellar transport protein 140 homolog
  KO
K19672  intraflagellar transport protein 140
Organism
xma  Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:xma00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:xma03037]
    102222366 (ift140)
Cilium and associated proteins [BR:xma03037]
 Primary cilia and associated proteins
  Intraflagellar transport (IFT) complex A
   102222366 (ift140)
SSDB
Motif
Pfam: TPR_IF140-IFT172 Beta-prop_IFT140_1st Beta-prop_IFT140_2nd TPR_IF140_C WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR19_1st Beta-prop_RIG_2nd WDR55 TPR_COPA_B WD40_Prp19 ANAPC4_WD40 TPR_IFT80_172 Beta-prop_EML Clathrin Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 TPR_GEMI5 Beta-prop_WDR35_TULP_N Beta-prop_WDR90_POC16_2nd PEP5_VPS11_N Beta-prop_ELP1_2nd PPR_1 TPR_19
Other DBs
NCBI-GeneID: 102222366
NCBI-ProteinID: XP_023196876
Ensembl: ENSXMAG00000019061
LinkDB
Position
10:2195510..2233412
AA seq 1442 aa
MAVYFDHRIEAPDRSNLPSHLTWHSTLPILAVASSGPAAGGSVDLYLQQGECVKSCHVDR
AQPAAVLRWHPAKPVLVLGWESGEVVLLTHPSGDQTVLPAVHTARIALLEWSGSGSRLVT
GDQNGALAVWKLDARGRLLGNYLVKHDYNKPLTCCIFKPASPGVDVAMLARASVSGDESA
LDMFSWKGAPLKMGPQEGLGFYVSSSDGKVHAVDEQGKTSPLLSEDGSIRKLFYLEKRGV
LVVVTDTLMLSQYTLRPEGGAHEFMKVKLSSTAGQNVDIIWTENSLLITATGEPVIKIWD
LERDENYVLSLDETLGFKKGEMINCVSYCAAKEILAAGTSKGRIAMWKTAMQPMSSSSYR
ADAKALWKLQTPTEIHGNVTELQWGSNQNLLAANNSRTVLILSEHVMSAHFGQQVAAVQL
APTQLSITNFSRGETLPLQCDMHIRGVCVSKDSVTVWNGKHISVFELSGTALHVTGSFPC
DSHIVAVHDENLYTVEPNRVQIRTPQGTVKQLLTFSRAEGNPVLLDVCQSYLAVGTDTAH
IRVYDLSRRDAKAHCGAKNLSDHISDLGALRSIKCNASGSQVSLLASQVNGRPDHKVYFY
DIEMDTVTHFDFFTGRPSTGVSPPDESDKQMFQENEISGRFPVAHCWDESEPRLFVCETA
PVGSEKSANAFSDLEDVSVVTLFCTQEHGLLLQDCFSRPSGLQALLALDVPYYYFTCKPG
EENPEVSPPSDQPIRAAPSSPPVMASRRPLRDFVGLEKCEKGTRDAMLNFSFYLSVGDMD
EAFKSIKLIKSKAVWENMARMCVKTRRLDVARMCLGNMGNARAAKAVKEAEAESEPEARV
AMLAIQLGMLEDAEKLYKSCHRYDLLNAFYQAFSEWPRALETAEAHDRIHLRTTYYNYAK
YLESMGHKNLALAYYEKSDTHRVEVPRMLQDDTVSLEVYVTKAKDKNIYKWWAQYLESQS
NMERALLFYERAQDYLSLVRVHCYLGNIPEASQIANNTGDRAASYHLARHYEGHEDIKQA
VHFYTRAQAYNNAIRLCKENSLDDQLMNLALLSNPEDMMEAACHYEEKGKHLDRAVALYH
KAGYVSKALELAFATEQFAALQLIAEELNENSDPALLARCSDFFVQHSQYEKAVELLAAA
KKYPEAVELCLTHNLTITEDLAERMTVTDSKDLTEEAGKALLEKIADCCMSQGSYHLATK
VYTQAGNKHRAMKALLKSGDTDKIAFFANVSRQKELFIMAANYFQSLDWRKNPKNLKRII
EFYTKGKAPDLLGGFYEACAQVEIDDYQNYEKALDALMEAFKCLSKAKDGSSGQQEVRLA
DLQHKIVLIKKFVHIRRLYSEDPDEAVRMCEALLEEPELNPAVRIGDAFGFLIDHHCQQG
RLQTAYQKLEELQKLLPSQSIRYYISQASLDALQKEMGFPLESGDHKHVLREDDEVEEDL
TV
NT seq 4329 nt   +upstreamnt  +downstreamnt
atggcggtgtatttcgaccaccgcatcgaagcccccgacagaagcaatctgccgtctcat
ctgacctggcactccacgcttcccatcctggctgtggcgtcgagcggccctgctgctggt
ggcagcgtggatctttacctgcagcagggtgagtgtgtgaagagctgccatgtggaccgg
gcccagccggccgccgtgctgcgctggcatcccgcaaagccggttctggttctgggctgg
gagagcggggaggtggtgctgctcacgcatccgtccggagatcagaccgtgctgccggcc
gttcacacggcccgcatcgcgctgctggagtggagcggctccggaagccgcttggtaacc
ggagatcagaatggagctctggccgtgtggaaattagatgccagagggcgacttttagga
aattacctcgttaagcacgactacaacaaacctttaacctgctgcattttcaaacctgcc
tctcctggggtcgatgtggcgatgttggcgcgggcgtcggtgagcggagacgaatcggct
ctggacatgttcagctggaaaggggcgcctctgaagatgggtcctcaggagggactgggc
ttctacgtcagcagctccgacggaaaggtccatgctgtggacgaacagggcaagacgagc
ccgctgctgagcgaggacggctccatcaggaagctcttctacctggagaagagaggtgtg
ctggtggtcgtcacggacaccctgatgctgtcgcagtacacactgagaccagaaggggga
gctcacgagttcatgaaggtgaagttgagcagcacagccgggcagaacgtcgacatcatc
tggaccgagaacagcctcctcatcacagcgacaggcgaaccagtcatcaaaatttgggac
ctggagagagatgagaactacgttctatctctggacgaaactctgggatttaagaaggga
gagatgatcaactgtgtttcctactgcgcagccaaagagatcctggcagctggaacctcc
aaaggccgcatagcgatgtggaagacggcgatgcagccgatgagcagcagcagctacaga
gccgacgctaaagccctgtggaagctgcagactcccactgagatccatggaaacgtcacc
gagctgcagtggggctccaatcagaacctgctggccgccaacaactccagaacggttctg
atcctcagtgagcatgtgatgtcggcgcacttcggccagcaggtggcagcagtgcagctc
gccccgactcagctcagcatcacgaacttcagcagaggagagacgcttcctctgcagtgt
gacatgcacatcagaggagtgtgtgttagcaaggactctgtgacggtctggaacgggaaa
cacatctctgtctttgagctctcagggacggctctgcatgttacaggatcatttccttgt
gattcccacattgttgctgttcatgacgagaacctttacaccgtggaaccaaacagagtc
cagatccgaacacctcaggggacagtgaagcagctgctaactttctcccgggccgaggga
aaccccgtgctgctggacgtgtgccagtcgtacctggcagtaggaacagacacggcacac
atcagagtttacgacctctccagacgagacgccaaagctcactgcggcgctaagaatttg
tccgaccacatcagcgacctcggcgccctgaggtccatcaaatgcaacgccagcggcagc
caagttagcctgctagcctctcaggtcaacgggcgacccgatcataaagtatatttctac
gacatcgagatggacaccgtgacgcactttgacttcttcaccggcagaccgtccactggc
gtctctccacctgatgaaagtgataagcaaatgtttcaggaaaatgaaatcagtggccgt
tttcctgtggcccactgctgggatgagagcgaacctcgactctttgtctgcgagaccgcg
cctgtcggctcggagaaatcagccaacgctttctcagatttggaggacgtgtcagtggtg
acgctcttctgtacgcaggaacatggactcctgcttcaggactgcttctccaggccttca
ggccttcaggccctcctcgccctggatgtgccatactactactttacctgcaagccaggt
gaggagaacccagaagtgtctccaccgtcagatcagccaatcagagcggctccttcttcg
ccccccgtcatggcgtccaggcgtcctctcagagactttgtgggcctagagaagtgcgag
aagggaacgcgggacgccatgttgaacttcagcttctacctgagcgtgggcgacatggac
gaagccttcaagtccatcaagctcatcaaaagtaaagcggtgtgggaaaacatggcacgg
atgtgtgtgaaaacccgccggctggacgtggcccgaatgtgcctggggaacatggggaac
gccagggcagcgaaagccgtgaaggaggcggaggccgaatccgaacccgaagcccgggtg
gccatgttggccattcagctgggcatgctggaagatgcagaaaagctgtacaagagctgt
catcgctacgacctgctgaacgccttctatcaggccttcagcgaatggccgcgagctctg
gagacggccgaggctcacgaccgcatccacctgcgcaccacctactacaactacgccaag
tacctggagtccatgggccacaagaacctggcgcttgcttattatgagaaatcagacact
caccgagtcgaggttcccagaatgctgcaggatgacacggtgtcgctggaggtatacgtc
accaaagccaaagataagaatatctacaagtggtgggcccagtacctggagagccagtcc
aacatggagagagcactgctgttctacgaacgcgctcaggattacctctctctggttcga
gtccactgctacctgggcaacatcccagaggcgtctcagatagccaacaacacaggtgac
agagccgcatcgtaccacctggccagacattacgagggtcacgaggacatcaagcaggcg
gtccacttctacacgcgggcccaggcctacaataacgccatacgactctgcaaggagaac
agtctggatgaccagctgatgaacctggcgctgctcagcaacccggaggacatgatggag
gccgcctgccactacgaggagaagggcaaacacctggaccgggccgtggcactctaccac
aaggccggttacgtctccaaagcgttggagttggcgttcgccaccgagcagtttgctgcg
ctgcagctcatcgcggaggagctgaatgaaaactccgaccctgcgctcctcgctcgctgc
tccgacttcttcgtccaacattcccagtatgaaaaggcggtggagttactggcagcggcc
aagaagtatcctgaggcggtggagttgtgcctgacccataacctgacgatcacagaggac
ctggctgagaggatgacggtgacggattccaaggatctgacggaggaggccggaaaggct
ctgctggagaagatcgccgactgctgcatgagtcagggcagctaccacctggccaccaag
gtgtacacacaggccggcaacaagcacagggccatgaaggcgctgctgaagtcgggcgac
acggataaaatcgctttctttgccaacgtttctcgtcagaaggagcttttcatcatggcc
gccaactacttccagtccctggactggcgcaaaaacccaaagaacctgaagcgaatcatt
gagttttacactaaaggaaaggcgccggacctgctgggcggcttctacgaagcttgtgct
caggtggagatagatgattaccagaactatgaaaaggctctggatgctctgatggaggcg
tttaagtgtctgtccaaagcaaaggacggttcctctggacaacaggaagtgaggttagcc
gacctgcagcacaagatcgtcctcatcaagaagttcgtccacatacgcaggttgtactcg
gaggatccagacgaggcagtgaggatgtgtgaagccttgctggaggaaccagagttgaac
cccgccgtccggatcggagacgcgttcggcttcctgatcgatcatcactgtcagcaggga
cgcctgcaaacggcgtaccagaagctggaggagctgcagaagctgctgccgtctcagagc
atcaggtactacatcagccaggccagcctggacgcgctgcagaaggagatgggcttccct
ctggagagcggcgaccacaaacacgtcctgcgggaggacgacgaggtggaggaggacctg
acagtctga

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