Xiphophorus maculatus (southern platyfish): 102222475
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Entry
102222475 CDS
T02923
Symbol
sympk
Name
(RefSeq) symplekin isoform X2
KO
K06100
symplekin
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03015
mRNA surveillance pathway
xma04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102222475 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
102222475 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xma03021
]
102222475 (sympk)
03019 Messenger RNA biogenesis [BR:
xma03019
]
102222475 (sympk)
Transcription machinery [BR:
xma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102222475 (sympk)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
102222475 (sympk)
U7-dependent histone pre-mRNA processing factors
102222475 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Cnd1
Adaptin_N
PDS5
Motif
Other DBs
NCBI-GeneID:
102222475
NCBI-ProteinID:
XP_005812285
Ensembl:
ENSXMAG00000005737
UniProt:
M3ZUA6
LinkDB
All DBs
Position
7:complement(30873132..30883125)
Genome browser
AA seq
1214 aa
AA seq
DB search
MERPSKDGEPPAVIDVTTSEKVVELLNQAALIPADEKLTVLKQVQELIINKDPSLLDNFL
DEIIAFQTDRSMEVRKFVIGFIEEACKRDNELLLRLIANLNLLLKDDSVNVVKKAILSLT
QLYKVALQWLVRSRSVSEMQEACWDLVSQMTGDVLSMLDSENDGVRTHAIKFTESLIVTL
SPRTPESDVPKRQEGDISLDKIPRDHPYIRYDALCDEGKAALDKLLKFMVHPAISSINLT
TALGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVSVLKHPCS
LEFQVQIGTLLLDLGMPQSEISRNTPLPREQRKRPRYEPAAEGKKVKMEPALIEDDEDKE
EPVPLAAPKPAAAPTPQSAIDLTAEFLRPLLTSENVANLVLISMVYLPDVMPASFQATYT
PVESAGTDAQIKHLARLMATQMTAAGIGPGLEQCKAREDESGKEEPAEDESGGKDVLIRR
SLSSMVGQAISVVGGYSEKPPAPEAPAVKRLPEPILPSVQTKMAGAGGRKKVFRLADVVQ
PLSDSQIGSLSSRAVKRILHSEKAVTQSGMSHVRVKLLSRLVTQFEGVMKEDVLDYVLED
MRCRSDLAFSLLYQEYNSYLSQLPAGLLDGYDHCLYTLLSGLQEKPEQRDGLFTKLVLEA
PIITESALDVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKEKVRST
ALAFLKRMYEKDHLRDYIEKFALNYLQLLVHPNPPSLLFGADKDTEVAAPWTEETVRQCL
FLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENCPKG
AETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQALPKLI
KLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKATNLCFG
EKNVYTSEVLAVVMQQLMEQNPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQVWKY
PKVWEGFVKCCQRTKPQSYSVLLQLPPLQLASVFERCPEMRAPLLQHVLSFTPHQQAHIP
NSVMAVLEAHKKLDPVPAEPVLEEELAEPTVAQQPGPGPEPGPALQQETVLLRDEEEPME
QEEAEPPTPETTDPIHQEEEPKAAEEPEPEPGQEPLEEPMEEPEAEPSDQPEPLTAPELE
AAPPAAESGSEDPE
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggagcgtccttcaaaggacggggagcctcctgctgtcatcgacgtcaccaccagcgag
aaggtggtggagctgctgaaccaggcggctctgatccccgcggatgaaaagctcactgtt
ctcaaacaggttcaggaactcatcatcaacaaggatccgtctcttctggacaacttcctg
gatgagatcatcgccttccagacggaccggtccatggaagtcaggaagtttgtgatcggg
ttcatcgaggaagcctgcaaacgggacaacgagcttctgctgcggctcatcgccaacctg
aacctgctgctgaaggacgacagcgtcaacgtggtgaagaaggccatcctgtccctgacg
cagctctacaaggtcgccctgcagtggctggtccggtcccggtcggtgtcggagatgcag
gaggcctgctgggacttggtgtcccagatgaccggagacgttctgagcatgctcgactcg
gagaacgacggcgtccggacgcacgccatcaagttcaccgagtcgctgatcgtcacgctg
tcgccgcggacgcccgagtccgacgtccccaagagacaggaaggagacatcagcctggac
aagattcccagggaccacccctatatccgctacgacgctctgtgtgacgaggggaaggcg
gcgctggacaagctgctgaagttcatggttcacccggccatttccagcatcaacctgaca
accgcgctcggctccctagcaaccatcgctaggcaacggcccatgttcatgtccgaggtt
gtgcaggcctacgagacgctgcacgccaacctgccccccaccttggccaagtcccaggtg
agcagcgtgaggaagaacctgaagctgcacctggtgtcggttctgaagcatccgtgcagc
ctggagttccaggtccagatcggcacgctgctgctggacctgggcatgccgcagagcgag
atcagtcgcaacacgccgctgccgcgcgagcagaggaagcgcccgcgctacgagcccgcc
gccgagggcaagaaggtcaagatggagccagcgctcatcgaagatgacgaggacaaagag
gagccggtgccgctcgccgccccgaagccggcggccgccccgactccgcagtcggccatc
gacctgacagccgagttcctgcgacccctgctgacctcagagaacgttgccaacctggtt
ctcatcagcatggtgtacctgccggacgtcatgccggcgtccttccaggccacctacaca
cctgtggagtcggccggaaccgacgcccagatcaaacacctggcccggctgatggcgacc
cagatgacagcggccgggatcggaccaggtctggagcagtgcaaggcgcgggaggacgag
tcggggaaggaggagccggcggaggacgagtcgggagggaaggacgtcctgatcaggcgg
tcgctgtcctccatggtgggccaggccatctccgtggtgggcggctacagcgagaagccg
cccgctcccgaggcgcccgccgtcaagaggcttcctgagcccatcctgccctccgtccag
accaagatggcgggtgccggcggcaggaagaaggtgttccgcctggcggacgtggttcag
ccgctgtccgactcgcagatcggatcgctgtcctccagagccgtgaagcgcatcctgcac
tcggagaaggcggtcacccagagcggcatgtcccacgtcagggtgaagctgctgtcccgg
ttggtgacccagttcgagggcgtgatgaaggaggacgtcctggactacgtcctggaggac
atgcgttgccgtagcgacctggccttctctctgctgtaccaggagtacaacagctacctg
agccagctgccggccggcctgctggacggatacgaccactgcctctacacgctgctgtcc
gggctgcaggagaaacccgagcagagggacgggctcttcaccaagctggttctggaggct
cccatcatcaccgagtcggcgctggatgtgatccgccgctactgtgaggacgagtcccgg
gtttatctgggcatgacgacgctgaaggagctgatcgtcaagaggccgtccaggcagttc
cagtacctccatgttctgctggacctcagctcccacgaaaaagagaaggtccgcagcaca
gctctggccttcctgaagcggatgtatgagaaggatcacctgagggactacatcgagaag
tttgccctgaactacctgcagctcctggttcacccgaacccgccctcgctgctgttcggc
gccgacaaggacacggaggttgctgctccgtggacggaggagacggtgagacagtgtctc
ttcctctacctgtccctccttcctctgaaccaccggctggtccatgagctggcgtctgtc
tacaccgaggccatcgccgacatcaagcgcagcgtgctgcgcgccatcgagcagccgatc
cgcgggatggggatgaactctccagagctgcttcttctggttgaaaactgtcctaaaggg
gcagagactctggtcactcgctgtctgcacattctgaccgataaagtgcctccgtcgcca
gagctggtggagcgggtccgggacctctaccacaagcgtgttccggacgtccgcttcctg
atcccggtcatcaacggcctggagaagaatgaagtcatccaggctctgccgaagctcatc
aagctcaacccgatcgtcgtgaaggaagtcttcaaccgactgctgggaactcagcacagt
gagggaagctcttcggtttctccgctgactccaggagatctgctcatcgccttgcacaac
attgactcaacaaagtgcgacatgaaatccatcatcaaagccaccaacctgtgcttcggg
gagaagaacgtctacacgtcggaggttctggcggtggtgatgcagcagctgatggagcag
aacccgctgcccatgctgctgatgcgcactgtcatccagtccctcactatgtacccgcgc
ctgggcggcttcgtcatgaacatcctgtcccgcctcatcgtcaagcaggtgtggaagtac
cccaaggtgtgggagggcttcgtgaagtgctgccagcggaccaagccgcagtcctacagc
gttctgctgcagctgccgccgctgcagctggccagcgtgttcgagcgctgcccggagatg
agggcgccgctgctgcagcacgtcctttccttcacgccgcatcagcaagctcacatcccg
aactccgtcatggcggtgctggaggcccacaagaagcttgacccggtgccagcggagccg
gttctggaggaggaactggcagaaccaactgtcgcacagcaaccaggacccggaccagaa
ccaggaccggcactacagcaggaaacagttctgctgagggacgaagaggaaccgatggaa
caggaagaggcggagccaccgacacctgagacgaccgacccgattcaccaggaagaagag
ccgaaagccgcagaggaaccagaaccagaaccgggccaggagccattggaggaaccgatg
gaggagcctgaagccgagccatcggatcagccggaaccgctcacggctccagaactggag
gcggcaccgcctgcagctgaaagcgggtcggaggacccagagtag
DBGET
integrated database retrieval system
