Xiphophorus maculatus (southern platyfish): 102222600
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Entry
102222600 CDS
T02923
Symbol
pcdh9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
102222600 (pcdh9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xma01009
]
102222600 (pcdh9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xma04515
]
102222600 (pcdh9)
Protein phosphatases and associated proteins [BR:
xma01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102222600 (pcdh9)
Cell adhesion molecules [BR:
xma04515
]
Cadherins
Protocadherins
102222600 (pcdh9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
Neur_chan_memb
MAP17
Motif
Other DBs
NCBI-GeneID:
102222600
NCBI-ProteinID:
XP_005799768
Ensembl:
ENSXMAG00000001671
LinkDB
All DBs
Position
4:complement(22750591..22936511)
Genome browser
AA seq
1236 aa
AA seq
DB search
MDLKDYYLLAALLACIWLDPSIAQELIYPIREELQENVLIGNIPKDLNISHTNAATGASA
NLVYRLVSKAGDNPLVRVLSSTGEIFTTSNRIDREKLCPGPSFEDSECSFEIEVVILPND
FFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFAIPSATDPDTGPNSVHKYEL
INGQSAFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGSPQKSSTAILQVT
VTDVNDNKPVFKESQIEVHIPENSPIGTSVVQLQATDADIGANADIHYVFGTQVSPATKR
LFALNTTSGLITVQRPLDREETAIHKLSVLASDGSSSPARATVTINVTDVNDNPPNIDLR
YIISPINGTVFLSEKDPINTKIALITVSDRDTDINGKVICFIEKDVPFHLKAVYDNQYLL
ETSALLDYEGTKEYNFKIVASDSGKPSLNQTALVRVRLEDENDNPPIFTQPVIELPVMEN
NKRDLFLTTLTATDEDSGKNAEIVYQLGPNASFFDLDRKTGVLTASRVFDREDQDRFLFT
VTARDNGTPPLQTQATVIVTVLDENDNNPKFTHNHFQFFVSENLPKYSTVGVITVTDSDA
GENAAVSLSILNDNENFILDPYSGVIKSNVSFDREQQSSYTFDVKAVDSGRPPCSSVAKV
TINVIDVNDNTPIVIYPPSNTSFKLVPLSSIPGSVVAEVFAVDGDTGMNAELKYTIVSGN
NKGLFRIDPVTGNITLEEKPAITDIGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTVGNA
TLIYDLIRRTMETPIDRNIGESSETYQNGDYLTIMIAFVTGALVVIIVIFVTVLLRCRHA
SRFKAAQRKKQGAEWMSPNTENKQNKKKKRKKRKSPKSSLLNFVTIEGNKPDDPAHEPIN
GTISLPTELEEQGIGRFDWNATPTTTFKPSSPDLARHYKSASPQSAFHLKADTPVSVKKH
HVIQELPLDNTFVGACDTLSKRSSTSSDHFSASESSSQGGFKTKGPMHTRQQGTLTRART
ELNPEYLDLRPRAELNPEYWTPCTPLSQRRVTFHLPDGSQESCSDSGLGDHEPVGSGSLL
TQPLPLVQAQDDFYEQASPDKRTEADGNSDPNSDGPLGPRGLVEATEMCTQECLVLGHSD
NCWMPPTLGSYQHPKSPVSSFSSQREWGQKDKLLNGHTLSRTWKNESGRSEHFVDRKQFG
SEEGHFTSSSMADIPLVSLKSCQSASCPDSPKDQQL
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggatctgaaagactattacctgttggctgctctgcttgcctgcatatggcttgatcct
tcaatagctcaagaattaatttatcccatcagggaggaattgcaagaaaatgtccttatt
ggaaatataccaaaggacttaaacatttcccatacaaatgctgccactggagcaagtgca
aatcttgtgtaccggctggtctccaaagctggagacaacccactggtccgtgttctgagc
agtactggagagatattcacaacatcaaaccgaattgacagagagaagttgtgccccggt
ccctcatttgaggacagtgagtgttcctttgaaattgaagtggttatcctgcctaatgat
tttttcaggctgattaagatcaaaataatcgtcaaagacacaaatgataatgcccccatg
ttcccgtcccctgtgatcaacatctctatcccagagaacactctcattaacagccgcttt
gctattccttctgccactgacccagacactggccccaacagtgtccacaaatacgagctg
atcaatgggcaaagtgccttcggtttagacattgtggagacgcctgagggggagaagtgg
ccccagcttattgtgcagcagaatcttgaccgggagcagaaggatacttatgtgatgaag
attaaagtggaggacggtggcagtccacagaaatccagcactgccattcttcaggtgact
gtaacagatgtcaatgataacaagccagtgttcaaagagagtcagatagaggtgcatata
cccgagaactcccctataggcacatctgtggtgcaactccaggctacggatgcagacatt
ggggcaaatgcagacatacattacgtatttggaactcaagtgtctcctgcgactaaaaga
ctttttgcattaaatacaacctctggcctaattacagtacagagacctttggaccgggag
gaaactgctattcacaagctctctgttttagccagcgatggcagctcaagtccagccaga
gctactgttactataaatgtgactgatgttaatgacaatccacctaatatagacctgaga
tacataatcagtcccattaacgggactgttttcctctcagagaaggatcccatcaatact
aagattgctctcatcacagtttcagacagagacactgacataaatggcaaggtcatttgt
tttatagagaaggatgtacctttccatctgaaagctgtgtacgacaaccagtatctgctg
gaaacatctgctctgcttgactacgaggggacgaaggaatacaactttaaaattgttgct
tcagattctggaaaaccgagtttgaatcagacggccttggtgagagtgaggctagaggat
gagaatgacaacccacctatttttactcagccagtcatcgagctgcccgtcatggaaaac
aacaagcgcgacctgttcctcaccacccttaccgctacagatgaggacagtgggaagaat
gcagagatagtgtatcagctgggaccgaatgcatcattttttgatctggaccgtaaaact
ggggtcctgactgcatctagggtttttgatagggaggatcaggatagattcctcttcacc
gtaacggcgagagataacggaactccccctttgcaaacacaggcaactgttattgtgact
gtgctggatgaaaatgataacaatcctaagttcacacataaccactttcagttctttgtg
tcagagaatctgcctaaatacagcactgtgggggtgataactgtgacagactcagatgca
ggagaaaatgctgccgtctctctctctattctgaatgacaatgagaactttatactagat
ccatactctggggtgataaaatctaatgtgtcttttgacagggagcaacagagctcctat
acttttgatgttaaggctgtggacagtggcaggcctccttgctcctcagtcgcaaaggtg
accatcaatgtcattgatgttaacgacaacacgccaattgtcatctatccaccctcaaac
acatctttcaagcttgtccctctgtcctctatcccgggatctgtggtagctgaggtgttt
gctgtggatggtgacacagggatgaatgctgaactgaaatacactattgtgagtgggaat
aacaagggtttattcagaatcgaccctgtcactggaaacattacactggaagaaaagcct
gcaataactgacataggcttacacagattagtggtcaatatcagtgacctaggatatccc
aaatcactccataccctggtgcttgtatttttgtatgtcaatgacactgtgggcaacgca
acactcatttatgatctcatccggcgcaccatggagaccccaatagacagaaacattggt
gaaagtagcgaaacttatcaaaatggtgactatttaaccataatgatagcctttgttacc
ggcgcattggtggtgatcattgtcatctttgtgactgtgctgctgcgctgtcgccatgca
tccagatttaaagccgcacagagaaaaaagcaaggggctgagtggatgtcacccaacaca
gaaaacaagcagaacaaaaagaaaaagcgcaagaaaagaaagtcccccaaaagctctttg
ctcaactttgtcaccatcgaggggaacaaaccagatgatcctgcccatgaaccaattaac
ggaaccatcagtctgcccactgagctggaagaacaagggattggacgctttgattggaat
gccacgcctactaccaccttcaaaccaagcagtcccgacctggctcggcactacaagtca
gcctcaccacagtcggcctttcatcttaaggccgacacacctgtatcagtcaagaaacat
catgtgatccaggaactcccattggataacacatttgttggggcctgtgacaccctttcc
aagagatcctccacgagctccgaccacttcagtgcctcagagagcagctcccaaggaggg
ttcaaaacgaaggggcccatgcacaccagacagcagggaacattaactcgtgcccgaact
gaactgaaccccgaatatctggacctccgtcctcgagcagagctgaatcctgaatattgg
accccttgcacccctttatcacagcggcgcgtcacgtttcacctgccggatggctctcag
gagagctgcagtgacagcggtctgggggaccatgagcctgtaggcagtggctctctcctc
acacaacctctccctctggtgcaggcgcaggacgacttctacgagcaggcctccccagat
aagaggactgaagctgatggcaactccgatcctaactctgatggacccctgggaccacga
gggcttgtggaagctacagagatgtgcacacaggagtgccttgtccttggacattcagac
aactgttggatgcctcccacgttaggatcgtaccagcatcctaagtcgcccgtgtctagc
tttagttctcagcgggagtggggtcagaaggacaaactccttaatggacacactctgtcc
agaacctggaaaaacgaaagtggacggtcagagcattttgtcgacaggaagcagtttggg
agtgaggagggacacttcaccagcagcagcatggctgatattcctttggtgagtctgaag
tcttgccagtcagcatcctgcccagacagtccaaaggaccagcagctataa
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