Xiphophorus maculatus (southern platyfish): 102222605
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Entry
102222605 CDS
T02923
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X2
KO
K14416
elongation factor 1 alpha-like protein
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102222605 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102222605 (hbs1l)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102222605 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
102222605
NCBI-ProteinID:
XP_014324685
Ensembl:
ENSXMAG00000004359
LinkDB
All DBs
Position
15:complement(13189236..13215716)
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AA seq
701 aa
AA seq
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MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCISPATANQFIYSRRELQAPKEEPLEEEEY
EDEDVPMSPCVDFNLDPLNQAKLFSCLDHMRAVLGDAVPDSVLTQAAMKHGFDPQRALDA
VLSEDSKTAPVTRGAAEDMPSVGRVAQEQTPLPQRTKQEAVAEKAKSRDAAPDKLDSEVV
PKVARMTVSGKKQTMGFDVPSSGENGVVASPARRGDSPENTKATPVPEAAPKRPETPSKA
SNGDEISASATPGRSSGKTRQAINIKAELERRQGGKPLLNLVVIGHVDAGKSTLMGHLLY
LLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETNSKVVTL
MDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLA
VAVNKMDQVNWQQERFQEISSKLGHFLKQAGFKESDVFFVPTSGLSGENLTARSTVSELT
SWYSGHSLLEQIDAFKAPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGFIQTGDKILA
MPPNETCTVKGITLHDEALDWAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIRVCTRFR
ARILLFNIEVPITQGFPVLLHYQTVSEPATIKKLISVLHKSSGEVLKKKPKCLSKGMNAV
VEIQTQRPVSLELYKDYKELGRFMLRYVGSTIAAGVVTEVR
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccacagaaatgttcgaggttacaactacgatgaagactttgaagatgacgac
atgtatggacagtctgtggaggatgactactgcatttcaccagcaacagccaatcagttc
atctattcacgccgagagcttcaagcacctaaagaggagcctctggaggaggaagaatat
gaagatgaggatgttcccatgtccccttgtgttgacttcaaccttgaccctcttaatcaa
gcgaagctgttctcctgtctggaccacatgcgagcagtactgggagatgcagtgccagac
tccgtcctgacccaggctgccatgaaacacggatttgatccacagagggctctggatgca
gtgctgtctgaagacagtaaaacagcaccggttaccagaggtgcagcagaagacatgccg
tcagtgggccgagttgcacaagagcagacgcctcttccacagagaaccaagcaggaggcc
gttgctgaaaaagcaaaaagcagagatgcggctcccgataaactggactccgaagtggtt
cccaaagtcgccagaatgaccgtctctggcaagaagcagactatgggcttcgatgttccc
agctcaggggaaaacggcgttgtcgccagcccagcacggcgaggtgacagccctgaaaac
accaaggcaactccggtccccgaggctgcacccaaacgacccgagaccccatccaaagcg
tcaaatggagacgagatctctgcctctgctacaccaggacgctcctccggaaagacgcgg
caggcgatcaacatcaaggcagagctggagaggagacaagggggcaaacctctgttaaat
ttagtagttataggtcatgtggatgcaggtaagagcaccctaatgggccacttgctttat
ctgctgggaaacgtcaacaagcgcaccatgcacaagtacgaacaggagtcgaaaaaggct
ggaaaggcctcctttgcctacgcctgggttctggatgaaactggcgaggagagggacaga
ggggtgacaatggatgtgggcatgacgaagtttgagacaaactcaaaggtggtgactcta
atggacgctccgggacacaaagacttcattcccaacatgatcacaggcgctgcacaggct
gatgtcgcggtgctcgtggtggacgccagcagaggagagttcgaggcaggctttgaagca
gggggtcagaccagagagcacgccctgctggtgcgttcgctgggtgtcactcagctggct
gtcgctgtaaacaagatggaccaggtaaactggcaacaggagcgtttccaagaaatcagc
tcaaaacttggccattttctgaagcaggcaggattcaaggagtccgatgttttctttgtc
cccaccagcggcctctcaggagaaaatctcactgcaagaagcacagtatcagagctgaca
tcttggtacagcggacacagcctgctggagcagattgatgcattcaaagcccctcaacgg
tcaatagacaaacctttcagactgtgcgtctcagatgtgttcaaagatcagggctcaggc
ttctgtgttacagggaagattgaggctggttttattcagacaggagacaaaatactggca
atgcctcccaatgaaacctgcacagttaaaggaatcactcttcacgatgaggcgctggac
tgggctgcagccggagaccacgtcagcctcacagtcactggaatggacatcatcaagatt
aatgtcggctgtgtgttctgtgatcccaaggagccgattcgagtctgtactcgattcaga
gccagaatcctgctcttcaatattgaggttcccatcacacaaggctttccagtactgttg
cattaccagacagtcagcgagccggccactattaagaaattaatcagcgttctgcacaag
agcagtggtgaagtcctaaagaagaagccaaagtgtttgagtaagggtatgaatgcggtt
gtggagattcagacccagaggccagtgtcattagagctatacaaggattataaagaactg
ggccgcttcatgttgagatacgttggctccaccatcgctgcaggtgtcgtcacagaggta
agatag
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