Xiphophorus maculatus (southern platyfish): 102223060
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Entry
102223060 CDS
T02923
Symbol
lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03018
RNA degradation
xma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102223060 (lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
102223060 (lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102223060 (lsm8)
03041 Spliceosome [BR:
xma03041
]
102223060 (lsm8)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102223060 (lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
102223060 (lsm8)
Spliceosome [BR:
xma03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
102223060 (lsm8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
102223060
NCBI-ProteinID:
XP_005810224
Ensembl:
ENSXMAG00000006466
UniProt:
A0A3B5Q4D9
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All DBs
Position
17:complement(963439..966113)
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AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSTQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSTLDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgccttggagagttacatcaaccgcaccgtggccattgtcacatcagacggc
aggatgattgtgggaactctgaagggcttcgatcaaaccatcaatctgatcctggacgag
agtcatgagcgagttttcagctccactcagggggtggagcaggtggtgctgggactctat
atcgtcagaggagacaatgtagccgtcatcggagagatcgacgaggaaacagactccacc
ctggatctgggaaacatcagagccgagccgctcaactccgttgtccactga
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