Xiphophorus maculatus (southern platyfish): 102223268
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Entry
102223268 CDS
T02923
Symbol
papd5
Name
(RefSeq) non-canonical poly(A) RNA polymerase PAPD5
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102223268 (papd5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102223268 (papd5)
03016 Transfer RNA biogenesis [BR:
xma03016
]
102223268 (papd5)
Enzymes [BR:
xma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
102223268 (papd5)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102223268 (papd5)
Transfer RNA biogenesis [BR:
xma03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102223268 (papd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
Polbeta
PAP_NTPase
PAP-OAS1
TUTase
Neugrin
Motif
Other DBs
NCBI-GeneID:
102223268
NCBI-ProteinID:
XP_005796241
Ensembl:
ENSXMAG00000016433
UniProt:
A0A3B5QA45
LinkDB
All DBs
Position
4:complement(8920064..8945407)
Genome browser
AA seq
678 aa
AA seq
DB search
MDPRIAWFQPEQRGPANNLWMQIWETTQGFGYLHVNSSYSTGSQSTPSLKPIVNNGASGA
VLTYRNGTLDSHNGGGDVKTQGMSTSAGVGEMTEQRDFIPLDTNSNHNNRAAGRGGVGGG
GQQGSGVAVLWRGLTDGHPNKRKRDNKASTFGFNSSLLNNGCGSNTERYEGYTGTPWKVR
NYSEGVVGLHEEIKDFYEYISPRPEEEKMRLEVVDRIKGVIKNLWPSAEVQVFGSFSTGL
YLPTSDIDLVVFGKWDTLPLWTLEDELRKNNVADENSIKVLDKATVPIIKLTDSFTEVKV
DISFNVNGGVKAARLIKEFKEKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAV
SFLQLHNRDVSSPNINIGVLLIEFFELYGRNFNYLKTGIRITDGGCYVAKDEVQKNMMDG
YRPSMLYIEDPLQPDNDVGRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNENESILG
RIIRVTQEVDEYREWIRKNWDSQSQNDRSLNRNDVKLLESKQLDECNNNFPDDEDVVVLP
SAPHSKSSSNTSSPLPSLGSSPSSSPLSPSSTSSSDADSDGTPCKTVKQQPVRNASTHRE
KSTVVSNHRIQNHSTSTPPASNKGGKARMSRSNNKSGHHGQQNSSFSSRSHQSNKPHHQG
NSKKRKNIRDSTQEDLCR
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggatcctagaatcgcctggtttcagccagaacaacggggacccgctaacaacctgtgg
atgcagatttgggagacgacgcaggggttcgggtatttgcacgtcaatagcagctactcc
acgggatctcagagtactccgagcctgaaaccaatcgtcaacaacggggcgtcgggagcc
gtccttacttacagaaacgggacgctggactcgcacaacggtggtggagacgtcaagact
caggggatgtctacctcagctggggttggcgaaatgacggaacagcgggactttatacca
ctggacaccaacagcaaccacaacaaccgagccgcgggcaggggcggtgtcggtggaggg
gggcagcagggcagcggggttgctgtgctttggaggggactcacggacggacaccccaac
aaaagaaagagagacaataaagctagcactttcggattcaattccagtctcttgaacaat
ggttgcggctctaacacggaaagatatgaaggttacacgggcacgccttggaaagtcagg
aactactctgaaggagttgtgggcttgcacgaggaaatcaaggatttctacgagtacatt
tccccacgtccagaggaggaaaagatgagattagaggttgtggacagaataaagggagtc
atcaagaacctttggcccagtgctgaggtccaagtgtttgggagtttcagcactggcctt
tacctgccaacaagtgatattgatctggtggtttttgggaagtgggacacactgcctctg
tggactctggaggatgaactgcgaaaaaataatgttgcagatgagaactccatcaaagtt
ttggataaagcgacggttcccatcatcaaacttactgattcctttactgaagtcaaagtg
gacatcagtttcaacgtgaatggaggtgttaaagctgctcggctcatcaaggaatttaag
gagaaatatcctgtcctgccttacctagtccttgtgctgaagcagtttctacttcaaaga
gacctcaatgaggttttcactggtggaattggttcctacagtctcttcctcatggctgtt
agcttcctgcagcttcataacagggacgtttctagccccaacataaacattggtgttctg
ctaattgaattctttgagctctacggtcgcaacttcaactacctgaagacaggcatcagg
ataacagacggtggttgctatgttgccaaagatgaggttcagaaaaacatgatggatgga
tacaggccctctatgctttacattgaggatcctctgcagccagacaatgatgttggccgg
agctcatatggtgccatgcaggtgaagcaggcgtttgattatgcctatgttgtcctcagc
catgctgtgtcacccattgccaagtactaccccaacaatgagaatgagagtatacttggt
cggataatccgagtgactcaggaagtggatgagtacagagaatggatccgaaagaactgg
gacagccagtctcagaatgatcgctctctcaacagaaacgacgtcaaattacttgagtcc
aaacagcttgacgagtgcaacaacaacttcccagacgacgaagatgttgtggttcttcct
tctgctcctcacagcaagtcctcttccaacacttcttctccactcccttctctgggctcg
tctccttcctcgtccccgctgtcgccgtcttccacatcctccagcgatgcggattcggat
ggtactccatgcaagacagtcaaacaacagcctgtccgaaacgctagcacacacagagaa
aaatctacggtggtcagtaatcaccgcatacagaatcactctaccagcactccacctgca
agcaacaaaggaggaaaggccaggatgtctcgttccaacaacaagagcggccaccacggc
cagcagaactcctccttcagctccagaagtcatcagagcaacaagccacaccaccaaggg
aacagcaagaagaggaaaaacatacgagactctacacaggaggatctttgcagatag
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integrated database retrieval system
