Xiphophorus maculatus (southern platyfish): 102223398
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Entry
102223398 CDS
T02923
Symbol
itgb5
Name
(RefSeq) integrin beta-5
KO
K06588
integrin beta 5
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04145
Phagosome
xma04148
Efferocytosis
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
xma04810
Regulation of actin cytoskeleton
xma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102223398 (itgb5)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
102223398 (itgb5)
04148 Efferocytosis
102223398 (itgb5)
09144 Cellular community - eukaryotes
04510 Focal adhesion
102223398 (itgb5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102223398 (itgb5)
04810 Regulation of actin cytoskeleton
102223398 (itgb5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xma04131
]
102223398 (itgb5)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xma04515
]
102223398 (itgb5)
Membrane trafficking [BR:
xma04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
102223398 (itgb5)
Cell adhesion molecules [BR:
xma04515
]
Integrins
Integrin beta subunits
102223398 (itgb5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
PSI_integrin
EGF_integrin
Integrin_b_cyt
I-EGF_1
EGF_2
EGF_Teneurin
vWA_SIBA-E
EGF_TEN
DUF2975
Motif
Other DBs
NCBI-GeneID:
102223398
NCBI-ProteinID:
XP_005805346
Ensembl:
ENSXMAG00000005318
UniProt:
M3ZT61
LinkDB
All DBs
Position
7:2365797..2419206
Genome browser
AA seq
797 aa
AA seq
DB search
MWSPGRAALCWMLLETFLRSAGGLNICMSGSATSCEECLLIHPSCAWCAQEDFGKRRSLT
SRCDLKQNLQKRGCEPRFIEYPRSTISVLQNSPLSTKGSGPAQYDVVQIMPQRISLSLRP
GDQTAFSLQVRQVEDYPVDLYYLMDLSLSMKDDLDTIRNLGTKLAEEMGKLTSNFRLGFG
SFVDKNMSPFSYTAPKYQENPCNGYKLFPNCVPTFGFRHILSLTDKVDRFNEEVQKQMVS
RNRDAPEGGFDAILQAAVCKEEIGWRKEAYHLLVFATDDVPHLALDGRLGGLVQPHDGRC
HLNDHNEYSASTKMDYPSLALLGEKLAENNIFLIFAVTKRLYVIYKNFTVLIPGTTVEIL
DQDSKNVIQLIIAAYNNIRSKVELTVSDHPEDISLSFTATCQDGKPLPGFRKCADLKIGE
TVSFDVSVEARGCPPRGTDQTFTIKPVGFKDRLEVAVDYQCDCSCSRTAQVNSSLCNSIG
MYNCGTCRCEPGYLGAHCECQEGEASSMYLSACREAEGKQVCSGRGECSCNQCLCYESEF
GKIYGRFCECDDFSCARHKGVLCSGHGECHCGECKCHAGFVGDNCNCSTEMSLCFSDDGK
MCSGRGSCVCGRCQCTEPGAFGETCEKCPTCPDACGTKRECIECRLFNSGRLADNETCQR
LCKDKIITVESLENEDDTAVLCVYKTEDDCVMKFTYLEHVSGRSILTALQEPECGGGPSA
LTVLLVVVSTILLVGVVLLATWKLVITIHDRREFSRFQSARVRARYLMASNPLYKDPITT
HFAEMETFEKSFNGGVH
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcccgggaagagccgctctgtgctggatgctgctggagacgtttctgcgctct
gctggaggtctcaacatctgtatgagcggcagcgccacctcctgtgaagaatgcctcctg
atccaccccagctgcgcctggtgcgcacaagaggacttcgggaagcgccgctcgctgacg
tcgcgatgcgacctcaagcaaaacctgcagaagaggggctgtgagccacgcttcatcgag
taccccaggagtacaatctccgtcctgcagaactcaccgctgagcactaaaggatcagga
ccggcccagtacgacgtggtgcagatcatgccccagaggatctccctcagcctgcggcca
ggagaccagacggcgttcagcctgcaggtgcggcaggtggaagattacccggtggacctc
tactacctgatggacctctcgctgtccatgaaagatgacctggacaccatccgtaacctg
ggcaccaagctggcggaggagatggggaagctgaccagcaacttccgtctgggcttcggg
tccttcgtggataaaaacatgtcccccttctcctacacggcccccaagtaccaggagaac
ccctgcaatggatacaagctcttcccaaactgtgtgcccaccttcggttttcgccacatc
ctctctctgacggacaaagtggaccgtttcaacgaggaggtgcagaagcagatggtgtcc
cggaaccgagacgctccagagggcggcttcgacgccatcctgcaggccgccgtgtgcaag
gaggagatcggctggaggaaggaggcctaccacctgctggtgtttgccacggacgacgtg
ccgcacctggctctggacggccggctgggggggctggtccagcctcacgacggccgctgt
cacctcaacgaccacaatgagtacagcgcctccaccaagatggactatccatccctcgct
ctgcttggagagaaactggccgaaaataacatcttcctcatcttcgccgtgaccaaacgg
ctctacgttatttataagaatttcacagttctcatacctggaaccacagtggagatcctg
gaccaggactcgaagaacgtcatccagctgatcatcgccgcctacaacaacattcggtcc
aaggtggagctgactgtgtcggatcaccccgaggacatcagcctgtccttcaccgccacc
tgccaggatgggaagccgctgccaggctttaggaagtgtgcagacttgaagattggagaa
acggtgtcctttgatgtgagtgtggaagctcgtggctgcccgccccgcggcaccgaccag
accttcaccataaagccggtggggtttaaggaccgcctggaggtggctgtggactatcag
tgtgactgcagctgcagccggacggcgcaggtcaacagcagcctctgcaactccattggc
atgtataactgcggtacctgccggtgcgagccgggctacctgggcgcccactgcgagtgc
caggagggcgaggccagcagcatgtacctcagcgcctgccgggaagccgagggcaagcag
gtctgcagcggccgtggcgagtgcagctgcaaccagtgcctctgctacgagtccgagttt
gggaagatctacggaagattctgcgagtgcgacgacttctcctgcgccagacacaaaggc
gtcctctgctcaggtcatggagaatgccactgtggggagtgcaaatgccacgccggcttc
gtgggcgacaactgtaactgctccacagagatgtcgctctgcttctcggacgacgggaag
atgtgcagcgggcgagggagctgcgtgtgcggccgctgtcagtgcaccgagccgggggcg
tttggagagacctgcgagaaatgccccacctgccccgacgcctgcggcaccaaaagggag
tgtatcgagtgtcggcttttcaactcggggagactcgcagacaacgagacctgccagcgc
ttgtgcaaggataaaatcataactgtggagagcctcgaaaacgaggacgatacagcggtg
ctgtgtgtgtataagacggaggacgactgtgtgatgaagttcacgtacctggagcacgtc
agcggacgctccatcctcaccgcgctccaggagccggagtgtggaggtggtccgtctgcc
ttaacggtcctactggttgtggtgagcaccatcttactggtgggagtggttctgctggcc
acctggaaactggtcatcaccatacacgaccggagagagttctctcgcttccagagcgct
cgggtccgcgcccggtacctcatggcatccaaccctctgtacaaggaccccatcaccact
cactttgcagaaatggaaacgtttgagaagtcttttaacggcggggtccactga
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