Xiphophorus maculatus (southern platyfish): 102223476
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Entry
102223476 CDS
T02923
Name
(RefSeq) paired amphipathic helix protein Sin3a-like isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
102223476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xma03036
]
102223476
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
102223476
REST complex
102223476
Heterochromatin formation proteins
Other heterochromatin formation proteins
102223476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
Motif
Other DBs
NCBI-GeneID:
102223476
NCBI-ProteinID:
XP_014326693
Ensembl:
ENSXMAG00000000025
LinkDB
All DBs
Position
4:6521172..6537151
Genome browser
AA seq
1292 aa
AA seq
DB search
MKRRAEDPEPIFVQQQPRRPPVQAIGEGFQRALVPAPPVVEAAADTMQPSTGIQYSLPQA
YQVPTMPQSTSGHGHNNATPHIGPHTHSLAVQSQGPAVVPGHVHPPTPIASVQGQQQQQQ
FQRLKVEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVINRVSQLFKGHPD
LIMGFNTFLPPGYKIEVQTNDLVNVTTPGQIHYITPQGISVQNIPTTGGSSQPTSLQQHQ
SLPQTSLHTTTTPTITTQPALNKASKQLIQSPAHTPTSQPNPSIPSYASPRSPSVQPHTP
VSSTPSSGPPLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEA
GGNYTPALTEQEVYTQVARLFKNQEDLLSEFGQFLPDANSSVLLGKSPPDRAESVRNDHG
PTVKRPSLNSKQRLNQNGLPIRRPAGVGSTPPFKKKALVIGKAHGMAEGGKLSTSTETMF
FEKVKKALRSSEAYDNFLRCLHIFNQEVISRTELVQLVIPFLGKFPELFTWFKNFLGYRE
SSHGELSHTESLPKERSTEGIAMEIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCREVL
NDTWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDIVLENNLATIRALETVQKRLS
RMSAEEQLRFRLDNTMGGSSEVIHRKAVQRIYGDKAPDIIDGLKRNPAVSVPIVLKRLKM
KEEEWKEAQRGFNKIWREQNEKYYLKSLDHQGINFKQNDTKVLRSKSLLNEIEMLYEDRQ
EHASEETAAPPPSGPHMTQTYDDSQILEDAAALIIHHVKRQVGIQKEDKFKIKQIINHFI
PDLLFARRGELSDLEEEEEEEEEEEMETNQDGPKKHNGLPGRSPSKSKLLFSNTAAQKMR
GTDDAYNLFFVNNYWYVFFRLHHILCSRLLRIYGQAEKQIEEETREREWEKDVLGLKRDK
NENPAIQLKMKEPMDVDVEDYYSVFLEMVRNLLDGNMEPAQYEDSLREMFTIHAYIAFTM
DKLIQSIVRQLQHLVTDDICVRVTDMYLAESAKKATGGAVSTQTSRATAEGAYQRKAEQL
MTDENCFKLMFMKNRGSVSVAMELLDTEEENSDEPTDAEKWSDYVSRYLNSDSASPELRE
HLAQKPVFLPRNLRRIRKCQRGWEQLQQERITKGSSDKSQDGSSELKMECMFKLNSYKMV
YVCKSEDYMYRHTALSRAHQSHQRVNRRLHGRFQTWLDSWAQKHVTPEMATNTHKWLMGD
AEEGLLSCTTTCSPEVLHYLNINKYRVQYRTL
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgaagagacgtgcagaagacccagaaccgatttttgtgcagcagcaaccacgccgtccc
ccagttcaagctattggagaaggctttcaacgggcccttgtcccggccccacctgttgtt
gaggctgctgcagacaccatgcagccctcaactggtatacagtactctctcccccaggcc
taccaggtgcctactatgcctcaaagcacaagtggacatgggcacaacaatgctacacca
catattgggcctcatacacatagcctggctgtgcagtctcagggacctgcagtggtccca
ggtcatgttcacccccccacacccatagcttcagtgcaaggacagcagcagcaacagcag
tttcagcggttaaaggttgaagatgccctgtcttatttggatcaagtgaaactgcagttt
gggaatcaacctcaagtttataatgattttctcgacattatgaaagagtttaaatcccag
agcatcgacactcctggagtcattaaccgtgtgtcgcagctctttaagggccacccagat
ctcatcatgggttttaacactttcctgccgcctggttataagatcgaggttcaaaccaac
gatctggtgaacgtaaccacacctggtcaaatacactacataactcctcaaggaatatcg
gtacaaaacatcccaacaactgggggatctagccaaccaactagcctccaacaacaccag
agtctcccacagaccagcctgcacaccaccactaccccaactatcaccactcaacctgct
ttaaacaaagccagcaagcagcttattcagtctccggcccacacacccaccagccagccg
aatccatccatcccgtcatacgcctcaccacgttctccttcagttcagccccacactccc
gtcagcagcaccccgtccagcgggccacctctccagaacaaccaacctgtggagtttaac
catgccataaattacgtcaacaagatcaagaaccgcttccagggccagccggatatctat
aaggccttcctggaaatcttgcacacttatcagaaagaacagcggaatgctaaagaggct
ggggggaattacacaccagctctgactgaacaggaggtttacactcaagtggcgagactt
tttaagaaccaagaggacctactgtcagaatttggacagttcctgccagatgcaaacagc
tcagtgttgttggggaagagtcctccagacagagcagagtcagtccgtaatgatcacggt
cccacagtgaagaggccctcgctgaacagcaaacagagactgaaccaaaatggtctgcca
atcagaagacctgctggagtgggatccacaccgcctttcaagaaaaaggctcttgtcatc
ggtaaggcccacggcatggctgaaggcggtaaactcagcacaagcactgaaactatgttc
tttgagaaggtgaagaaggctctacggagctcagaggcatatgacaacttcctccgatgt
ctgcacatcttcaaccaggaagttatttctcgcactgagctggtccagctagtcatccca
tttcttggaaaattcccagagctttttacttggtttaagaacttcttgggctaccgtgaa
tctagtcacggggagctgagccacacagagagtttacccaaggagcgttctacagagggc
atcgccatggagattgattatgcttcctgcaagaggctggggtccagctacagagcactg
ccaaagagctatcagcaacctaagtgcacaggaagaacaccgctgtgcagagaggttttg
aatgatacctgggtgtcttttccatcctggtcagaggattccacatttgtgagctccaag
aagactcaatatgaggagcatatttacagatgtgaagatgagcgctttgagctggatatt
gtgttggaaaacaacctcgccacaataagagccctggagacggtgcaaaagaggctctcc
cgcatgtcggctgaggagcagctgcgattcaggctggacaacacgatgggcggctcttcc
gaggtcattcatcgcaaagccgttcagaggatatacggcgacaaagctcccgacatcatt
gacggcctcaagagaaaccccgccgtgtctgtacccatcgttctgaaaaggttaaaaatg
aaggaagaagagtggaaagaagcacagagagggttcaacaaaatctggcgggaacagaac
gagaaatactacttgaagtcactcgaccatcaaggcataaacttcaaacagaatgacacc
aaagtgctgcgctccaagtctttacttaatgaaattgagatgttatatgaagatcgccag
gagcacgcctcggaggaaaccgccgccccgccccccagtggccctcacatgacgcagacc
tacgacgatagccagatcctggaggatgccgctgctctcatcattcatcatgtcaaaaga
caagtgggcattcagaaagaagacaagttcaagatcaaacagataatcaatcatttcatc
cccgaccttctgtttgcgcgacgtggcgagctctccgacctggaggaagaggaggaagag
gaagaagaagaagaaatggagacgaatcaggacggccccaagaagcacaacggcctgcca
ggccgcagcccatccaaatccaagctcttgttctccaacacggcagctcaaaagatgcgg
ggcacagatgacgcttacaacctgttttttgtgaacaactattggtatgtgttcttccgc
cttcatcacatcctctgctcccgtttgctgcggatttacgggcaggccgagaagcagatt
gaggaggaaactcgcgagcgagagtgggaaaaggacgtgctgggcctgaaaagggacaag
aacgaaaacccagccatccagctgaagatgaaagagccgatggatgttgatgttgaagac
tactactcagtgtttctggaaatggtgcgaaatcttctggacgggaacatggagccggct
cagtacgaggactccctgagggaaatgtttaccatccacgcctacatcgccttcaccatg
gacaagctaatccagagcattgtccggcagctccagcacctcgtcaccgatgacatatgt
gtgcgtgtaactgacatgtacctggctgaaagtgccaaaaaagctacagggggcgctgtt
tccacacagacatccagagctacagcagaaggggcctaccagcggaaagcggagcagctg
atgacagatgaaaactgcttcaagctgatgttcatgaagaaccgaggatctgtgagcgtg
gcgatggagctgctggacacagaagaggagaactctgatgagccaacagatgcagaaaaa
tggtcagactacgtgagcaggtacctgaactcagattctgcttctccggagctacgtgag
catttggcccagaaaccagttttcctccccaggaatctgagacggatacggaaatgccag
agaggatgggagcagctgcagcaagaacgcatcactaaaggctcctctgacaagtcgcag
gatggcagcagtgagctgaagatggagtgcatgttcaaactaaactcctacaaaatggtt
tacgtttgcaagtcagaggactacatgtacaggcacactgcgctttcaagagctcatcag
tcccaccagcgggtgaacagacgtctgcatggccgcttccagacctggctggactcctgg
gcccagaagcacgtgacgcctgaaatggccaccaacactcacaagtggctgatgggagat
gcggaagagggactgttgtcatgcaccaccacctgcagccctgaagtcctccactatctc
aacatcaacaagtaccgggtgcagtacaggacactgtag
DBGET
integrated database retrieval system
