Xiphophorus maculatus (southern platyfish): 102223621
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Entry
102223621 CDS
T02923
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xma03009
]
102223621 (pdcd11)
Ribosome biogenesis [BR:
xma03009
]
Eukaryotic type
90S particles
Other 90S particles
102223621 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Suf
TPR_14
Spt6_S1
HAT_Syf1_CNRKL1_C
TPR_19
OB_RRP5
TPR_16
UTP6_C
NRDE-2
TPR_CcmH_CycH
ARM_TT21
RPN7
TPR_15
ARM_TT21_5th
HAT_Syf1_M
Motif
Other DBs
NCBI-GeneID:
102223621
NCBI-ProteinID:
XP_023190388
Ensembl:
ENSXMAG00000004638
UniProt:
M3ZR13
LinkDB
All DBs
Position
5:complement(20846829..20861550)
Genome browser
AA seq
1805 aa
AA seq
DB search
MALVEEDFPRGGKTKKPTDSKVTAERSKVENLFQQSDEQTTTKKKKGGAKKVKKQKTEEQ
EGGLTLNAAAKSVEILHIKNVREGMLLLGCVKEVADFEVTVSLPCGLQGFLSIRNICDAY
TKLLSKQLDSDVENEEFCSLSQIFWPGMLLRCVVYKLDITKGGSLSIQLSVNPKLVNKSL
TSSSLMAGMVLSGCVESVEDHGTIIDIGVSGTKAFLPEDATKNKQHKSEELKVGQYVTSR
VEEVKNDGRVVWLAAAARASADAKQGWTLTNLLPGLTVKATVKKVTKHGLHLDFLSSFSG
QVDFLHMEQESSYREGLQVRACVLYIEPTTRLVGLSLSSHLLQPVSNVDYAPPGGDRTGE
VVKECKMTTIHHMSGAMLELPDKTPAFAHRNHLKEPSDPPNENKVSAMLEHTCRILDFSP
MEQIYFVSLRKSVIEQRFYRYQDIHAGQVVEGTVSVLLSHGMVVHLSEHVKGLVPRTHLS
DILLKNPEKKYVEGMKVKCRVLSVDVDNRKLCLTRKKALVESTLPLFLSYNDARPGRVSH
GFIVSIKNFGCIVRFYGNVKGLVPLEELSSEPIVCPEDVFYIGQVLKAKVLQCDPEKEKL
LLSFKAAAEGETEESTEPPIDCEVGKRVEARVVKKSINSLEVVILPDEGRAFLPTVHLSD
HMSNCPLLWEVLQEGDTISNLICFNKNKQNLTLTKKPRVRSSLEEGAVAKDFSEITVGMQ
LVGCIRNIMSYGVFVEFPYGLVGLAPKSAMSDKFISDTTTAFKLGQTVIAKVTNVDEEKR
RFLVTLKISEVITPAGDARAALLNGIQERRTVKEMLTVRDDGELRQQLAALTVGQKLKLM
VDSATQAGAKFKSDNLPGADVIASKRHVAGVSLTPGQKVSVVILNVDILSTCVHVSVLPK
LLGKKKSLNKGSDCCAVVQFVDQDFAVISLNDAAQLTLLHTCSHLNEVALSEAERLKVGM
TLSVEVVEPSCEQLEGLPLVLRKGSAPKRQRTASENQADSSGHRFGEVLQGKVRSVKPTY
IQVALEDGSTGSVHVSQVVEPAEVKLGSFPTSTVRVGRVIKARVIGGREATSHRFLPFSH
PKFKYTIPELTLIPSRLDPGVDFKPVTAKNKLAGYKPGDEITCFVSKFKSDKKCLEVTSD
PCVTGTVDLLSMITDPKDASHPEKLFKLGQAVRAKVVEASVQPHRFVLSLSGIHKLEKGS
IALGMVTSVQPQVGLVVKLPFGGAGTVSVTDVADTYKSKPLEAFRKDQLIRCYLLDVQNG
KWHLSLRPSRLNPKNTKPAKDPEVLSLDHLQLDQMVRGYVKIVSEQGVFIRLSHNITGRA
QLQQSSKYFINNHKILSSHLPVNTLLTTKILSVDREDQLVDLSLLPADTGKPDVLPESLG
LPLRLVGDAEKRDSKKAKKRLHAESEQKPAEPQIPKKKKKKSSKPKTDGDDSGVEVYFRE
EEDEGEEVKCDFSQVSPSSAGPSRLQVAAGFSWDVGLSSLKPVLEAKDGHSSDGEEQDGN
KKPQKKTRHELEQEKKSAEKALLQREAELMDPSLRPQDAAGFERLLLASPSSSLLWLQYM
AHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTQESLKKVFERAVQ
FCEPMPVYQQLADIYANSNKIKEAEGLYKTMVKRFRQNKAVWLSYGTFLLQQGQSDAASS
LLQRALKSLPPKESVDVITKFAQMEFRFGDAERGRNMFDKVLTNYPKRTDLWSVFIDLMV
KHGSQKEVRAVFDRTIHLSVSVKKIKFFFKRYLEYEKKHGTPQSVQAVKEKAMEFVEAKG
KDAAN
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atggcgttggtagaggaggattttcctcgtggaggcaaaacaaagaagcccaccgacagt
aaagtcacagcggagcggagtaaagtagagaacctgtttcagcagtcagatgaacaaacg
acaacaaagaaaaaaaaaggaggtgccaagaaagtcaaaaagcaaaagacagaagagcaa
gaaggtggcctgacgcttaacgctgctgctaaaagcgtggagattctgcacatcaagaat
gtgagagaagggatgctgttactgggctgtgtgaaggaggtggctgactttgaggtgacc
gtcagcctcccgtgtggcctgcaaggcttcctcagcatcaggaacatctgtgatgcgtac
accaagctgctgagcaagcagctggactcagacgttgaaaacgaggagttctgctctttg
tcccaaatcttctggccgggaatgctgctccgatgcgtggtttataaattggacatcact
aaaggaggctcgctcagcattcagctgtcggtcaatccgaagctggtcaacaagagcctc
acctcgagctctctgatggctggaatggtcctgagtgggtgcgtggagagtgttgaagat
catggcactataattgacattggtgtgagtggaacaaaagccttcctgcccgaggatgct
acaaagaacaaacagcataaaagtgaagagcttaaagtgggtcagtatgtgacttctcgg
gtagaggaagtaaagaacgacggccgcgtcgtctggctcgccgccgcggctcgggcctcc
gctgacgccaaacagggctggactctcaccaacctcctgccgggcctcacggtcaaagct
accgttaaaaaggtgaccaaacatggcctgcacctggacttcctgtcctccttcagcggc
caggtggattttctgcacatggagcaggagtccagctacagagaggggcttcaggtgcga
gcgtgcgttctgtacatcgagccgaccacccgcctcgtcgggctgagcctgagcagccac
ctcctgcagcccgtgtctaacgtcgactacgctcctcccggcggggaccggaccggagag
gtggtgaaggagtgcaagatgaccacgatacaccacatgtcgggggccatgttggagctg
ccggacaaaaccccggcctttgcgcataggaaccatctgaaggagccaagcgacccgccc
aatgaaaacaaggtctctgcaatgcttgagcacacctgcaggatcctggacttcagcccc
atggagcaaatttattttgttagtttacgaaagagcgtgattgagcagcgattttataga
tatcaggatattcacgccggccaagttgtagaggggacggtgtctgtcctgctgagccac
gggatggtggtgcatctgtcggagcacgtcaaaggtctggtgcctcggacgcacctctcc
gacatcctcctgaaaaacccggagaagaagtacgtcgaggggatgaaggtcaagtgtcgg
gtgctgtcagtagacgtggacaacaggaagttgtgtctgacccggaagaaggcgctggtt
gagagcaccctgccgctgttcctcagctacaacgacgcccgtcccggccgggtgtcccac
ggcttcatcgtgtctatcaaaaacttcggctgcatcgtccgtttctatggcaacgtcaaa
ggtctggtcccactggaggagctcagctctgagcccattgtctgtccggaggatgtcttc
tatattggacaggtgctgaaggccaaagttcttcaatgtgacccagagaaggagaagctg
ctgctgtcatttaaggcggcggcagagggagagacggaggaatctaccgagcctccgatt
gactgcgaggttggaaagagggtggaagcaagggtggtgaagaaatccatcaacagtctg
gaggtcgtcatcctcccagacgagggccgcgccttcttacccacagtgcatctctccgat
cacatgtccaactgtccgttactgtgggaggttctgcaggaaggagacaccatttcaaac
ctcatttgctttaacaagaacaagcagaacctcacgctcaccaagaaaccaagggtgaga
tcgtcactggaggaaggagcggtggccaaagatttctctgagattaccgtggggatgcag
ctggttggctgcatcaggaacatcatgtcctatggcgtctttgtggagttcccctacggt
ctcgttggtcttgcacccaaatctgccatgtcggataagttcatcagcgacacgacgacc
gccttcaagctgggccagacggtcatcgccaaggtgaccaatgtggatgaggaaaagcgg
cgattcctggtcacgctgaagatctctgaggtcataacgcctgccggggacgcccgggcc
gcactcctgaacggcatacaggagagacgaactgtgaaggaaatgctgactgtcagagat
gacggagaactgcggcagcagctggctgctctgaccgtcggccagaagctgaagctgatg
gtggattcagcgacacaagccggggccaaatttaagtctgacaacttgcctggtgctgac
gttatcgccagtaaacgccatgtggcgggagttagcctgacccctgggcagaaagtgagt
gtggtcatccttaatgtcgacatcctgtccacctgtgtccatgtttccgtcctcccaaag
ctgctggggaagaagaagtctctgaataaaggctcagactgctgtgcggtggtgcagttc
gtcgaccaggactttgctgtcatctcgctaaacgatgcggcgcagctgactctgctccac
acctgcagccacctgaacgaggtcgccctgtccgaggcagagagactcaaggtggggatg
actctgtcggtggaagtcgtagaacccagttgcgagcaactggaagggctccccctggtg
ttgcggaagggcagcgcgccgaagcggcagcgtacggcttcggagaaccaggcggactct
tcgggacaccgcttcggcgaagtcctgcagggcaaagtgaggtcggtgaagcccacctac
attcaggtggcgctggaggacgggagcacgggcagcgtccacgtatcgcaggtggtggag
ccagccgaggtcaagctggggtccttccccacgtccactgtgagagtgggcagggtgatc
aaagccagggtcatcggaggacgagaagccaccagtcacagatttcttccgttttctcac
cccaaattcaagtacaccattcctgaactcactcttatacccagccgactggatcctggt
gtggattttaaaccagttacagcaaaaaataaactggccggctataagcccggcgacgaa
atcacatgtttcgtatcaaagtttaaatcagacaagaagtgcttggaagtcacctctgac
ccctgcgtcacagggaccgtggacctgctttccatgatcacagatcctaaagatgccagc
cacccagaaaaactgttcaagctgggccaggcggttcgcgctaaagtggtggaagcgagc
gtccagcctcatcgctttgtgctgtcgctctcagggatccataaactggagaaaggcagc
attgcattgggaatggtgaccagtgttcagccacaagtcggcctcgtggtcaagctcccc
tttggcggcgccggaacggtttctgtcactgacgtcgctgacacctacaagtcgaagccg
ctggaggcgttcaggaaggatcagctcatcaggtgttaccttctagatgtgcagaatgga
aagtggcacctgtccctacgtccatcacggttgaacccaaagaacaccaagccagcgaag
gacccagaagtcttgtctttggaccatctgcagctggaccagatggtccgaggttatgtc
aagattgtgagtgagcagggggtcttcatcaggctgtcgcataacatcacaggaagagct
caacttcaacagtcctccaaatacttcattaacaaccacaagatcctctctagtcacctt
ccggtcaacaccctcctcaccactaaaatcctcagtgtggacagggaggaccagttggtc
gacctctctcttctccccgcggacaccggaaagccagacgtgcttccggaatccctcggc
ctgccgctgcgtctcgtcggagacgcggagaaacgcgactcaaagaaggcaaagaaacgt
ttgcacgccgagagcgaacagaaaccagcggagccccagatcccgaagaagaaaaaaaag
aaatcaagcaaaccaaaaactgatggtgatgacagcggagtggaggtctacttcagagaa
gaggaggatgaaggggaggaagtaaagtgtgatttttctcaggtgtctcccagctcggcg
ggtccgtccaggctgcaggtggcagccggcttctcctgggacgtggggctgagctccctg
aagcccgtgttggaggcaaaggatgggcactctagcgacggagaggagcaagacggcaac
aaaaagccccagaagaagacgcgccatgagctcgagcaggagaagaagtcagcggagaag
gccctcctgcagcgggaagccgagctgatggacccgagcctgcggccccaggacgcggcc
ggcttcgagcggctgctgctcgcctcgcccagcagctcgctgctctggctccagtacatg
gcccaccacctgcaggccacgcagatcgagcaggcccgggctgtggccgagagggccctc
aaaaccatctccttcagggaggagcaggagaagctgaacgtgtgggtggccctgctgaac
ctggagaacatgtacggaacccaggagagtctgaaaaaagtgtttgagcgagccgtgcag
ttctgtgagcccatgcccgtgtaccagcagctggccgacatctacgccaactccaacaaa
atcaaggaggcagagggtctgtataagaccatggtgaaacgtttccggcagaacaaagca
gtgtggttaagctacgggaccttcctgctccagcagggccaaagtgatgctgccagctct
ctcctgcagagggcgctgaagagtctaccccccaaagagagtgtggatgtaatcaccaag
ttcgctcagatggagttccgcttcggcgacgctgagagaggtcgcaacatgttcgacaaa
gtcctgacgaactatccgaagcgcacggacctctggtccgttttcatcgacctcatggtc
aaacatggatcgcagaaggaagtgagggccgtcttcgatcggacgatccacctcagcgtt
tccgtgaagaagatcaagttcttcttcaagcgctacctggagtatgagaagaagcacggc
acccctcagagcgtccaggcggtcaaagagaaggccatggagttcgtggaagcaaaaggc
aaagacgctgcaaactga
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