Xiphophorus maculatus (southern platyfish): 102223657
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Entry
102223657 CDS
T02923
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102223657 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xma03021
]
102223657 (polr1a)
Enzymes [BR:
xma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102223657 (polr1a)
Transcription machinery [BR:
xma03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
102223657 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
Nop14
Motif
Other DBs
NCBI-GeneID:
102223657
NCBI-ProteinID:
XP_023184312
Ensembl:
ENSXMAG00000004032
LinkDB
All DBs
Position
23:27520082..27570373
Genome browser
AA seq
1691 aa
AA seq
DB search
MLFSKEVPWRRLEGMSFGLYSTEEIRKLSVKTITNSKLLDSVGNVAQNSLYDLALGPADI
KEVCSTCCQDFNNCPGHFGHIELPLPVYNPLFFDKLYLLIRGTCLSCHMLTCPRATIHLL
VNQLRLLEHGAMEEVHLVERVLNQHLEENPKATGDEIEQVLREFTSMVVGANAEASQNSK
PIKHLVEKKSSLINDFWRVQLNTRKCPYCRGGRTTVRREHNSKLIVTMPTGGQTAENTED
LLTGKRVFLTASTAREHISKVWEKEGFFLKFLFPGLEESSGSEGQKGFYPDLFFLELLVV
PPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGIIRKLLALIAGEKQTEEEEEEEVTLEPE
DQTFLSGISGATLPDKLFNTWIRLQSHVNIVFDSDMDKLITDKYPGIRQILEKKDGLFRK
HMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNV
HPGASMVINEDGRKTILSPSSAAQREAVAKQLLTPCPGPQKMPMKIVNRHIKNGDVLLLN
RQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQTELGRAEAYTL
VSTNQQYLVPKDGKPLAGLIQDHMVSGTKMTIRGCFLTKDQYTELVYRGLTDKTGRVRLL
APAVLKPQQLWTGKQVVSTLLLNILPDKAVPLNLTGKAKIPGKAWIQLPPRSSPGYNPES
MCESQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQL
YRGFTLGVEDILVKPGANMRRKQIIQESLKIGTKALQAAYNLPPTVTPAEAASRWQDAHL
SPDQRDFSMADHKFKEVANQVNNDINKVCMPVGLHTPFPENNLQLMVQSGAKGSTVNTMQ
ISCLLGQIELEGRRPPLMPSGKFLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAG
REGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQF
LQPRQFPFIENNHEVIRRSQDLDSVLARLDPHTAARHFTAIQRWKAKRELACPRRGAFLL
FSQKKLAKLREAMPSTEPLPAQDPAVLQLVKDWHSLGEAGRAKYTRRSSRCPEPTLGLFR
PDVCFGSVSENFHDITEKYLQNRGNATEDGMETQRLRQLLHYKWQRSLCDPGEAVGLLAA
QSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLKNKKALK
RAKTLRKQLTRVCLAEVLQKVDVVETLRIEAYQRLQSFKVTFHFLPPERYRDDKLLTPHQ
ILHYMETRFFRLLLEAIKKRSAKLASIAVETRKATPGDKNMDEDGTAGVQDGGGEEEEEG
EIVDDQGDEGDADASDAKRKSKQAEEVDYESEDEGEGGDAEEDQGEEENSQANSEEETQP
ESADTGEQQQQKKKKKKEMRVGQGGESSVQMRVNSVLSSNSAIKRYSFDQQEELWCEVEL
EFPLNRVHFDLTSVLSTLAQNAVIMETRGLTRCLLSETTTKSGEKQTVLNTEGINMHEIF
KYNDILDVNKLYSNEVHAMASTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMC
FEGVYKPLNRHAIMSNSSPLQQMTFETSFKFLKQATMLGSRDQLVSPSACLVVGKVVKGG
TGLFELKQPLQ
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttccaaagaagtgccatggcggcggctggagggcatgtcgtttggcttgtac
tcaaccgaagaaataaggaagttgagcgtgaaaaccatcaccaactccaagcttctggac
tctgttggaaatgtggcccagaacagtttgtatgacttggcgctggggcctgcagacatc
aaagaggtctgttccacctgctgtcaggatttcaacaactgtccaggacactttggacac
atagagctgcctctaccagtctacaacccactgttctttgataaactctacctgttgatc
cgcggcacgtgcctgtcgtgtcacatgttgacgtgtccccgcgccaccatccacctgctg
gtgaaccagctccggttactggagcatggagccatggaggaggtccatcttgtggagaga
gttcttaatcagcaccttgaagagaaccccaaagccacaggagacgagatcgagcaggtg
ctgagggagttcaccagcatggtcgttggagcgaacgccgaggcctcacagaactccaaa
cccattaaacatctggttgagaagaagagcagcctgataaacgacttctggagggtccag
ttgaacacgaggaagtgtccgtactgcagaggtggcaggacaacggtgcgtcgcgaacac
aacagcaagctgattgtcaccatgccaaccggaggacaaactgctgaaaacacagaagat
cttctgactggaaagagagtgttcctcactgccagcaccgccagggagcacatcagtaaa
gtctgggagaaagaaggtttcttcctgaagttcctgtttcctggtctggaggagagctca
gggtctgagggacagaagggtttctacccggacctgttcttcctggagctgctggtggtt
ccaccctgcagatatcgccccatcaatcgcctaggcgaccagatgttcaccaacggccag
acggtcaacatgcaggctgtgatgaaggactgcggcatcatcaggaaacttctggctctc
attgcaggagagaagcaaactgaggaggaggaggaggaggaagtgacgttggagccagag
gatcagacgttcctgtcgggaatcagcggagcgacgttaccggataagctctttaacacg
tggatccgcctgcagagccacgtcaacatcgtcttcgacagtgacatggacaaactgata
acggataaataccccgggatcagacagatcctggagaagaaggatggattgttccggaag
cacatgatggggaagcgggtggactacgctgcccggtccgtcatttgtcccgacatgtac
atcggaaccaacgagatcgggatccccatggtgtttgccaccaagctgacctaccctcag
cccgtcacaccctggaacgtgaaggagctccggcaggccgtcctcaacgggcccaatgtc
caccccggcgcctccatggtgattaacgaggacggcaggaagaccatcctgtcgcccagc
agcgccgcgcagagagaggcggtcgccaagcaactgctgacgccctgtcccggtccacaa
aagatgcccatgaagattgtgaatcgacacataaagaacggagacgttctgctgctcaac
agacagcccaccctgcacagaccctccatacaagcccactgcgctcgcatcttacccgga
gagaaggtcctgcggcttcactacgccaactgcaaggcgtacaacgccgactttgacggc
gacgagatgaacgcccacttccctcagaccgaactgggccgagccgaggcctacacgctg
gtcagcaccaaccagcagtacctcgtccccaaggatggtaaacctttagcgggcctcatc
caggaccacatggtgtcaggaaccaagatgaccatcagaggctgcttcctcaccaaggac
cagtacaccgagctggtgtaccgagggctgaccgacaagacgggccgggtcaggctgctg
gcccccgccgtcctcaaacctcagcagctgtggaccggaaagcaggtcgtctccacttta
ttgctgaacatcctcccagacaaagccgtcccgcttaacctcaccggcaaagccaaaatc
cccggcaaggcttggatccagctcccgcctcgatcttctccggggtacaacccggagagc
atgtgtgaatcacaggtggtgatccgtcagggcgagctgctggtcggcgttctggacaaa
gcgcactacggctcgtcggcctacgggttggtccactgctgctacgagctgtacggaggg
gagaccagcgggaaactgctcagctgtctggctcgactcttcaccgcctacctgcagctc
tacaggggcttcactctgggagtggaagacattctggtgaaacctggagccaatatgcgg
aggaaacaaatcatccaagagtctctgaaaatcggcaccaaagccctgcaggctgcctac
aacctgcctcccaccgtgactccggctgaagccgccagtcggtggcaggacgctcacctc
agccccgaccagagagacttcagcatggccgatcacaaattcaaggaagtggccaaccaa
gtgaacaacgacatcaacaaggtgtgtatgccggtcggactgcacaccccgttcccagaa
aacaacctccagctcatggtgcagtctggcgctaaaggctccaccgtcaacaccatgcag
atctcctgcctgctgggtcagattgagctggagggccgcaggccgcccctgatgccttca
ggaaagtttctgccttgcttccagccatacgacccttcacccggcgcggggggcttcgtt
tctggacgcttcctcacaggaatcaaaccacaggagtttttcttccactgcatggctggt
agagaaggactggtggacacggctgtgaaaacgtcccgatcaggatatctccagagatgc
atcataaagcacctggagggtctggtggtgcagtacgacctgaccgtcagggacagcgac
ggctccgtggtccagttcctgtacggcgaggatgggctggacatccccaagacccagttc
cttcagccgaggcagttcccgttcatcgagaacaaccacgaggtcatcaggaggtcacag
gacctggacagcgttctggcccgtttggaccctcacactgcagcccgccacttcacagcc
atccagcgttggaaagcaaagagggagctggcgtgtcctcgcagaggagcctttctgctg
ttttcccagaagaagttagcgaaactgcgagaggccatgccgtcaactgagccgctgccc
gctcaagatcccgcagtgctgcagttggtgaaggactggcactctctgggcgaagccggc
agagccaaatacaccaggcggtcgtcccgctgccccgagccgaccctgggcctgttcagg
cccgacgtctgcttcgggtcggtgtcggaaaacttccatgacatcaccgagaagtacctt
cagaacagaggcaacgccacggaggatggcatggagacacagaggctgcggcagctgctt
cactataagtggcagcgctccctgtgcgacccgggggaagctgtgggcctgctggcagct
cagtccataggcgagccctccacccagatgaccctcaacaccttccacttcgcgggcaga
ggagagatgaacgtcactctgggaatcccccgactgagggagatcctgatggtggccagt
tccaacattaaaacccccatgatgagcgtcccggtgctgaagaacaagaaggccttgaag
agggccaaaacgctgcggaaacagctcaccagagtctgcctggctgaggtgctgcagaag
gtggacgttgtcgagacgcttcggatcgaagcttatcaaagactgcaatcgtttaaagtc
acctttcatttcctgcctcctgagcgttaccgtgacgacaagctgttaactccccatcag
atcctccactacatggagacgaggtttttccgtctcctcctggaagccattaaaaagcgc
tcagccaagctggcctccatcgccgtggagacgaggaaggccacccctggagataaaaac
atggacgaggatgggaccgcaggggtccaggacggcggtggagaagaggaggaggaagga
gagatagttgatgaccagggggatgaaggagacgctgatgcgtcagacgccaagaggaaa
agcaaacaggcggaggaggtagactacgaaagcgaagacgagggcgaaggtggcgatgcc
gaagaggatcagggcgaggaggagaacagccaggcaaactctgaggaggagacccagcct
gagtcagcagacactggagagcagcagcagcagaagaagaagaagaagaaagaaatgaga
gtggggcaagggggagagtcctcggtccagatgagggtgaactcggttctgtcatctaac
tcggccataaagagatactccttcgatcagcaggaagaactctggtgtgaggtggagctg
gaattccctttgaacagggtccacttcgacctgacctcggtcctgtcgactctggcccag
aacgccgtcatcatggagacccgaggcctgacgcggtgcctgctgagcgagaccacaacc
aagtctggggaaaagcagacggttctcaacacagagggcatcaacatgcacgaaatcttt
aagtacaacgatatcctggacgtcaacaaactgtactccaatgaggtccacgccatggcc
agcacctacgggatcgaagtggctctgaaagtcatagagaaggagatcaaagacgtcttt
gcagtttatgggattgaggttgacccccggcatctgtcgttggtggcagactacatgtgt
ttcgaaggcgtctacaagccgttaaaccgacacgccatcatgtcgaactcttcccctctg
cagcagatgacctttgagaccagcttcaagttcctcaaacaggccaccatgctggggtca
cgggatcagctggtttctccctcggcctgcttggttgtagggaaggtggtcaaaggtgga
acaggcctgtttgaactgaagcagcctctgcagtag
DBGET
integrated database retrieval system
