KEGG   Xiphophorus maculatus (southern platyfish): 102223743
Entry
102223743         CDS       T02923                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1 isoform X2
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
xma  Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:xma00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xma03041]
    102223743
Spliceosome [BR:xma03041]
 Complex B
  Other components
   Complex B specific factors
    102223743
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 WD40_Gbeta ANAPC4_WD40 Beta-prop_EML LisH_TPL Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_ACSF4 Beta-prop_RIG_2nd Ge1_WD40 Beta-prop_TEP1_C Beta-prop_Nup120_160 WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_Aladin Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_WDR41 Beta-prop_NWD2_C Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_HPS5 Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_BBS7 Beta-prop_WDR75_2nd WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_IP5PC_F Beta-prop_NOL10_N LisH LisH_PAC1 VPS8_N LisH_WDR26 PROPPIN WD_LRWD1 DUF7165 zf_topless Beta-prop_IFT122_2nd PA14
Other DBs
NCBI-GeneID: 102223743
NCBI-ProteinID: XP_005808672
Ensembl: ENSXMAG00000019096
UniProt: M4AXF1
LinkDB
Position
23:5347817..5354062
AA seq 513 aa
MSIEVESADVVRLIMQYLKENNLHRTLATLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEERFPTQLSRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCVSFCKDTSQLLSASFDQTIRIHGLKSGKSLKEFRGHASFVNEATFTPD
GHHIISASSDGTVKVWNVKTTECSSTFKPLGTSAGTDITVNNVLLLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLIATYSEDGLLKLWRP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctattgaagtggaatctgcagacgtggtacgtctgattatgcagtatttgaaggaa
aataatctgcaccgaaccctggccacgttgcaggaggagacaacagtgtctctaaacaca
gtggacagcatagaaagctttgtggcggacatcaacagtggccactgggataccgtcctg
caagccatccagtccctcaagctaccagataaaaccttgatagatctttatgaacaggtt
gtcttggagcttattgagctgagagagctcggtgctgctcgttcactcctcagacagacc
gatcccatgatcatgctcaaacagacgcagccagagagatacatccacttggagaacctg
ttggctcgctcctacttcgatcccagagaggcttatccagatggcagcagtaaagagaag
cggcgcgccgccatcgctcaggccctggcaggagaggtcagcgtggtgccgccctcccgt
ctcatggctctgctgggacagtctctgaagtggcagcagcatcaaggtctcctgccgcct
ggtatgactatcgacttgttcagaggtaaagcagctgtgaaagatgtggaggaggagcgc
ttccccactcagttgagcaggcacataaagtttggacagaaatctcatgtggagtgttct
agattctcccctgatggtcagtacctggtcactgggtctgtggatggattcattgaagtg
tggaacttcaccactggaaaaatcaggaaggatctgaaatatcaggctcaagataacttc
atgatgatggatgatgctgtgctgtgtatgtgcttcagtcgagacactgagatgttagca
actggagcccaagatggaaagattaaggtgtggaagattcagagtggtcagtgtctgagg
agattcgagcgcgcccacagcaaaggagtaacttgtgtgagtttctgtaaagacaccagc
cagctgctcagcgcctccttcgatcagacaatcagaatccatggactgaaatccggtaaa
tcactgaaggagttccgtggccacgcctcgtttgtcaacgaagctacatttaccccagac
ggccatcacatcatcagtgcttcctcagatggaacagtcaaagtgtggaacgtgaaaact
acggagtgcagcagcacatttaagcctcttggtacgtcagctggcacagacatcaccgtc
aacaatgtcctcctgctgcccaagaaccctgagcatttcgtagtgtgtaaccgctccaat
acagtggtcatcatgaacatgcagggacagattgtgaggagtttcagctccggtaaaagg
gaaggcggtgactttgtgtgctgcactctgtcgccccgcggcgagtggatatactgcgta
ggtgaagactttgtgctctactgcttcagcaccgtcacaggcaaactggagagaacactg
acggttcacgagaaagatgtgattggcatcgcccatcacccccaccagaacctgatcgcc
acttacagcgaggatggcttgctgaaactctggagaccctga

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