Xiphophorus maculatus (southern platyfish): 102223885
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Entry
102223885 CDS
T02923
Symbol
smarcd3
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102223885 (smarcd3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xma03021
]
102223885 (smarcd3)
03036 Chromosome and associated proteins [BR:
xma03036
]
102223885 (smarcd3)
Transcription machinery [BR:
xma03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102223885 (smarcd3)
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102223885 (smarcd3)
PBAF complex
102223885 (smarcd3)
GBAF(ncBAF) complex
102223885 (smarcd3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
TFIIA
Ribosomal_uS5m_N
Motif
Other DBs
NCBI-GeneID:
102223885
NCBI-ProteinID:
XP_023182226
UniProt:
A0A3B5REB9
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Position
21:complement(6950923..7000013)
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AA seq
518 aa
AA seq
DB search
MATEETAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGPPYGGSPAVRPGL
PSPVMEPSRKRPAPSQQVQQQQQQQQQQQQQQQAVQNRARKKPVGFPGASEMPARQMDMR
EPQSDPTLGSNAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEA
LKRPMKQQKRKLRLYISNTFNPARPDADDSDGSIASWELRVEGKLLDDPGKQKKKFSSFF
KSLVIELDKELYGPDNHLVEWHRTPTTQETDGFQVKRPGDVSVRCTLLLMLDYQPPQFKL
DLRLARLLGIHTQTRSCIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEI
PQRLTNLLLPPDPIVINHVISVDPNDQKKTACYDIDVEVEDPLKSQMSSFLLSTANQQEI
ASLDNKIHETIESINQLKIQRDFMLSFSRDPKGYIQDWLKSQSRDLKLMTDVVGNPEEER
RAAFYHEPWSQEAVSRYFYCKIQQRRQELEQALAVRNT
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggctacggaggagacggcggggggagccaggaaagccaccaagagcaaactgtttgag
ttcctggtccatggagtgcgtcctggcatgccgtctggagcgaggatgccccaccaagga
gcccccatggggccccctggccccccgtatggagggagtccggcagtgcggcccggcctg
ccctccccggtgatggagccgagtcgtaagcggcccgccccgtcccagcaggtccagcag
cagcagcaacagcagcagcagcaacaacagcagcagcaggccgtgcagaaccgcgccagg
aagaagccagttggatttcccggagccagcgagatgccggcgaggcagatggacatgaga
gagccccaatcagatcccacgcttggatcaaatgctaagagaaggaaaatggcagacaag
attcttccgcaaaggatccgggaactggtacctgaatctcaggcctacatggatctactg
gcttttgagcgcaagctggaccaaaccattatgcgtaaacgcgtcgacatccaggaagct
ctgaagagaccaatgaagcagcaaaagcgtaaactaaggctctatatttcaaacacgttc
aacccagctcgacctgacgctgatgactcagatggcagcattgcatcatgggagctgagg
gtagagggaaagctgctggatgatccggggaagcagaagaagaagttttcttcctttttt
aagagcttggtgatcgagctggacaaagagctgtacggtccggacaaccacctggtcgag
tggcaccgcacacccaccactcaggagacagacggtttccaggtgaagagacctggagat
gtgagcgtgcgctgcaccctgctgctgatgttggactaccagcctccccagtttaagctg
gacttgcgcctggcgcgcctgctgggcatccacactcagactcgctcttgcatcattcag
gccctctggcagtacgtgaagaccaacaagctgcaggactcgcatgacaaagagtacatc
aactgtgacaagtacttccaacagattttcgactgtcctcgcctgaagttttctgagatt
cctcagcgcctcactaacctcctgctaccgcccgaccccatcgtcatcaatcatgtgatc
agcgttgaccccaacgaccagaagaagacggcctgctacgacattgacgtggaggtggaa
gaccccctcaagagccagatgagcagcttcctcctctccactgccaaccagcaggaaatc
gcctccctcgacaacaagatccatgagaccatcgagtccatcaaccagctgaagatccaa
cgggacttcatgctcagcttctccagagatcccaaaggctacatccaagactggctcaag
tcccaaagccgagacctcaagttgatgaccgacgtggtggggaaccctgaggaggagcgg
agggcagcgttttaccacgaaccctggtcccaggaggcagtcagccgctacttctactgc
aagatccagcagaggagacaggagctggaacaggccttagcagtccgcaacacctaa
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