Xiphophorus maculatus (southern platyfish): 102224406
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Entry
102224406 CDS
T02923
Symbol
smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102224406 (smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xma03021
]
102224406 (smarcc1)
03036 Chromosome and associated proteins [BR:
xma03036
]
102224406 (smarcc1)
Transcription machinery [BR:
xma03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102224406 (smarcc1)
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102224406 (smarcc1)
PBAF complex
102224406 (smarcc1)
GBAF(ncBAF) complex
102224406 (smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
102224406
NCBI-ProteinID:
XP_023186452
Ensembl:
ENSXMAG00000019067
LinkDB
All DBs
Position
3:9038560..9063543
Genome browser
AA seq
1138 aa
AA seq
DB search
MATSATAAGGTGSGGGAAGLVGGGTAVARKKDGGPSTKFWESSETISQLETVRLWIGKHY
KKHVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPPLTKLPAKCFLDFKAGGTLCHILG
SVYKYKSEQGWRRFDLQNPSRMDRNVEMFLNVEKHLVQNNCLTRPLVYLSPEIEQKQVSK
LKDIIKRHQGSVTDDKSKATHHIHPSLTQQEDEEWLRPVMRKDKQVLVHWGFYPDSYDTW
VSAGEVDGDVEDPPSSEKPWKVHAKWVLDTDAFNEWMNEEDYELDENKKPVSFRQKIFPK
EEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRGEEED
TEEDMTKDMDDSSAGASMEDGVSKNANSKKDSENTPVKGGNMADLDDMEDDSVLSGGKDD
DEQGKGEVNRMDAGEDNVTEQTHHIIIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTP
EIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDAESR
PLPMGPPPTPHFTVLADTPSGLIPLNHRPPPIPPPQPMPNFADKSKDKAIDLQNFGLRPD
LYKKNAKQGKGGGTTREWTEQETLLLLEALEMFKDDWNKVSEHVGSRTQDECILHFLRLP
IEDPYLESTETSLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRV
REEVPAELVEAHVKKVQEAARSTGKVDPTFGLESSGIAGTAPEEPEKTETAEPEKMETDS
DSQQADKAEMKDEAEKPSESAEKSDKTESTEKVKKEGAEGSEHEQEKEEEGETKTASADK
DKDETMDTSSSDQEKEKEEKTATEEGEEKQKKLEHDIGEGNIATAAAAALASAATKAKHL
AAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHM
EQLKYAEMKARQQMEQQAAAAAAAAAQAQGQGSGPGPHPGPPPHGMHHGGPPPHHGGPPT
AHHGGPPPHHGGPPPHHGGPPPGAAMHPGFPPMGHHPMAPHHPGQTGPMEPGQPMPGRML
SAPPSAGPPPGGMPPMMPPRHPGAPNGMYPGPPPAQPEAIPPAPVAPPAPPSGRVSDN
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtcggcgacagcagcaggcgggacgggctcaggcggaggagcggcgggtctg
gtcggcggcggaacggcggtagcccgaaagaaagacggcggtccttctacgaaattttgg
gaaagttcggaaacgatttctcagcttgagacggtgcgactttggatcggaaagcactac
aagaagcatgtccagaatgactctccatccagtaagtccctggctggcctggtggtccaa
ctgcttcagtttcaagaggatgcgtttggacgcagggtcaacaatcctcctcttaccaag
ctacctgccaaatgtttccttgatttcaaggcaggaggaactctctgtcacatcttggga
tcagtatacaagtataaaagtgagcagggctggaggagatttgacctgcaaaatccgtct
cggatggaccggaatgtggaaatgttcctaaatgttgaaaaacacctggtccagaataac
tgcctgacacggcccctcgtctacctgtcgccagaaattgaacagaagcaggtcagcaaa
ctcaaagacatcatcaagaggcaccagggttcagtcactgatgacaagtcaaaggcaact
catcacattcacccatctttgacacagcaggaagacgaggagtggctgcgtccggtcatg
aggaaggacaagcaggtccttgttcactggggcttctacccagacagttatgacacctgg
gtatccgctggtgaggtggatggtgatgtggaagatcctcccagctctgagaaaccctgg
aaggttcatgccaagtgggttttagacacagatgccttcaatgagtggatgaatgaggaa
gactatgagctggacgaaaacaaaaagcctgtcagcttccgacagaaaatcttccccaaa
gaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggcaaactctgctggcaag
aagaggagacgctcgccctcgccgcccagcactccagccgagtcccgaaaaaaaggagga
aagaaggggaacccagggcctcactggaagcgacggggacacagaggagaggaagaggac
actgaggaggacatgacgaaggacatggatgattcctctgccggcgccagcatggaggat
ggtgtgtccaagaatgctaattcaaaaaaagacagtgaaaatactccagtcaagggaggg
aatatggcagatttggatgacatggaggatgattcggtgctgtccggtggaaaggatgat
gatgaacaaggcaaaggagaagtcaatcggatggatgctggagaggacaatgtaactgaa
cagactcatcatatcatcattcccagttatgctgcctggttcgactacaacagcatccat
gagattgagaggagagctcttccagagttctttaatgggaagaacaaatccaaaactcca
gaaatatacctggcctatcgtaacttcatgattgacacttatcggctgaaccctcaagag
tacctgacctccacttcctgtcgcagaaacctgactggggacgtctgtgccatcatgagg
gttcatgcattcctggagcagtggggtttggtaaattaccaggtggatgctgagagtcgg
ccgttacccatgggcccccctcccacgccccacttcactgtgctggctgacactccctct
ggcctcattcccctcaaccaccggcctccacctattcctcctcctcagccaatgcccaac
tttgcagataagtccaaagacaaagcaattgacttgcagaactttggcctccgccctgac
ctctacaagaaaaacgccaaacagggaaagggaggcggtaccaccagagaatggactgag
caagagactctactactgcttgaggccctggaaatgtttaaagacgactggaacaaagtg
tcggagcatgttggttcacgcacccaagatgaatgtatcctgcacttcctgcggctgccc
attgaagatccttacctcgagagcacagaaacgtctctgggtcctctggcctaccagccc
attcccttcagccagtctggaaacccagtaatgagcacagtcgccttcctggcctctgtg
gtggatcccagagtggcatctgctgcagccaaggcagctttagaggagttttctcgcgtg
cgtgaggaagttcctgctgagttggtggaagctcacgtcaagaaggtccaggaggcagca
aggagcaccggcaaggtggaccccaccttcggcctggagagcagcggcatcgcaggaacc
gcaccagaggagcccgaaaaaacagaaaccgcagaaccagaaaagatggaaacagattcg
gactcccaacaggctgataaggctgagatgaaggacgaggcggaaaagcccagtgagtcg
gcagagaaaagcgacaagacggagagcacggaaaaggtgaagaaggagggagcagaggga
tcagagcatgaacaggagaaggaggaagaaggagagaccaaaacagcttcagcagataaa
gataaggatgaaactatggacacctcatcttcagatcaagagaaggaaaaagaggagaag
acagctaccgaggagggagaggaaaagcagaagaagttggagcatgacattggagaggga
aacatcgctacagcggccgctgctgctctcgcttctgcagccaccaaagccaagcacttg
gcagcagttgaagaaaggaaaattaagtccctggttgctctgctggtggaaacccagatg
aagaagttggaaatcaagctgaggcacttcgaagagctagagaccatcatggaccgcgaa
aaggaagctctggagcttcagcggcagcagctcctcaccgagcgccaggcgttccacatg
gagcagctaaaatacgctgagatgaaggccagacaacagatggagcagcaagccgccgcc
gctgctgctgcagccgcccaggctcaaggtcagggctctggacctggaccccaccccggt
ccccctccacacggtatgcatcacggcggacccccgccccaccacggcggccctcctact
gctcaccatggaggaccaccgccccaccacggcgggcctcctccccaccatggaggaccg
ccaccaggtgctgcaatgcatcctgggttccctccaatgggccaccatcccatggccccc
caccacccaggacagacaggaccgatggaaccgggtcagcccatgccgggacggatgctg
tccgctccgccttctgccggaccgccaccagggggcatgcctcccatgatgcccccacgt
caccctggagcccccaatggcatgtatcctggccccccacctgcacaaccagaggcgatt
cctccagctcctgtggctcctccagcgcccccaagtggccgggtgtctgataattaa
DBGET
integrated database retrieval system
