Xiphophorus maculatus (southern platyfish): 102224591
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Entry
102224591 CDS
T02923
Symbol
ncbp1
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03013
Nucleocytoplasmic transport
xma03015
mRNA surveillance pathway
xma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102224591 (ncbp1)
09122 Translation
03013 Nucleocytoplasmic transport
102224591 (ncbp1)
03015 mRNA surveillance pathway
102224591 (ncbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102224591 (ncbp1)
03041 Spliceosome [BR:
xma03041
]
102224591 (ncbp1)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
102224591 (ncbp1)
Spliceosome [BR:
xma03041
]
Common components
Common spliceosomal components
Cap binding complex
102224591 (ncbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
AAA_13
AAA_11
Importin_rep_6
DUF1690
Vfa1
DUF1664
PHM7_cyt
DUF2203
Motif
Other DBs
NCBI-GeneID:
102224591
NCBI-ProteinID:
XP_005807846
Ensembl:
ENSXMAG00000018253
UniProt:
M4AV18
LinkDB
All DBs
Position
23:5068332..5079102
Genome browser
AA seq
796 aa
AA seq
DB search
MSRRRHSDENDGGQAHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKNNL
YNEAVYLVRFLSDLVNCHVIAAPSMVVMFENFVSVTQEEDVPQVRSDWFVYVVLSCLPWV
GKELYEKKDVEMDRLLSQIEGYLKRRVKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPGHMPDALYPIPRVIFRVFDYTDAPEG
PVMPGSHSVERFVIEENLHCIIKTHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPLPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTACIDRFINWFSHH
LSNFQFRWSWDDWADCLTMDLEKPKPKFVKEVLEKSMRLSYHQRIVDIVPPTFSALIPAE
PIFSFKYGDESGTSLPGYPVSITVSNAIKNRASNEEILAILKEVPNPNQEDDDDEGESFN
PLKIDVFLQTLLHLAAKSFSHSFSALGKFHEILKNLTESDDGKLHILKVIYEVWRNHPQM
IAVLVDKMIRTQIVDCAAVANWLFSQDMAHEFTRLFTWEILHSTIRKMNKHVQKIQKELE
EAKDKLEKQQHKRRDSGDDEDMEKNSEEDEEGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMLLTEHLVRCETGSVDISTPWYKNCIERLQQVFLMHHGTIQQYMGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggaggcgacatagcgatgagaacgacggaggtcaagctcataagaggagaaga
acatctgagcccattgaaattgaagatcgcctggagtctttgatatgtcgcgtaggagaa
aaaagcacttcttccctcgagagcaaccttgagggcctcgcaggtgtcttggaggctgac
cttcccaactacaaaaacaaaatcctgcgtattttatgtgctgtcgctcgcctgctgcca
gagaagctcaccgtctacacgactttagtcggtctcctcaatgccagaaactacaacttt
ggtggcgagtttgtggaggcgatgatcaggcagctgaaggagactttaaaaaacaacctg
tataatgaagcagtttacctggtacgctttctgtcagatttggttaactgccatgtcatc
gccgctccatctatggtggtaatgtttgaaaattttgtcagtgttactcaagaagaagat
gtgccacaggttcgatcagactggtttgtgtatgtcgttctgtcctgtcttccctgggtt
gggaaggaactttatgagaagaaggatgttgaaatggaccgactcctcagtcagattgaa
ggctacctcaagaggagagtgaagactcatgttcccatgctgcaggtgtggacagcagag
aaaccccatccacaagaagagtatctggactgtctgtgggcccagatccagaagctgaag
aaagaccgctggcaggagcgccacatccttcgtccatacatcgctttcgacagcgttctc
tgtgaggcgctgcagcacaacctgcccccgttcaccccgccgggacacatgcctgatgcc
ctgtaccccatcccccgggtcattttccgcgttttcgactacaccgacgccccagagggt
cccgttatgccgggcagccattctgtggagcggtttgtgattgaagaaaacctgcactgt
atcatcaaaacccactggaaagagaggaaaacatgtgctgcccagttgctcagttaccct
ggaaaaaacaagatcccactgaactaccacatcgtggaggtgatctttggagaacttttc
cagctgccgttaccgccccacatcgacgtcatgtacactacgctcctcatcgagctctgc
aagctgcagccagggtcactccctcaagttctggcccaggccacagagatgctttacatg
aggctggacacaatgaacaccgcctgcatagacagattcatcaactggttttcccatcat
ttgagcaacttccagtttcgatggagttgggatgactgggcggactgtttgacaatggat
ttagagaaaccaaagcccaagtttgtcaaagaggttctggagaaatcgatgagactttca
taccatcagagaattgtggacatcgtccctccaactttctccgccctcatccctgctgag
cccatcttttctttcaaatacggagacgagagtggcacctcgttgccaggttacccagtt
tccattacagtttccaacgccataaagaaccgagcgtccaacgaggaaatcctcgccatc
ctgaaagaagtccccaacccaaaccaggaggatgatgatgatgagggtgaaagcttcaac
ccactgaagattgatgtgtttcttcagactcttctccatctggcagcgaagtccttcagc
cattccttcagcgcgcttggcaaattccacgagatccttaaaaacctgacggaaagcgac
gatgggaaactgcacatcctgaaagtgatttatgaggtgtggaggaaccaccctcagatg
atcgccgtgttggtggataaaatgattcggacgcagatcgtggattgtgccgctgtcgct
aactggctcttctctcaggacatggctcacgagttcacaagacttttcacctgggagatt
ctacactcaaccatccgaaagatgaataaacatgtgcagaagatccagaaggagctggag
gaagctaaagataagctggagaaacagcagcacaagaggagggacagcggggacgacgag
gacatggagaagaacagtgaggaggacgaggagggtcagctggaggagcagattgagagg
ttgcaggaaaaggtggagtcggctcagagcgagcagaaaaacctcttcctcgtcatcttc
cagcgcttcatcatgctgctgacagagcatctggttcgctgcgagacgggcagcgttgac
atcagcacaccctggtataaaaactgcatcgagcggctgcagcaggtcttcctcatgcac
catggaaccatccagcagtatatgggaactctggagaacctgcttttcaccgctgagctc
gaccatcacatcctggccgtctaccagcagttctgcgcgctgcagctctga
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