Xiphophorus maculatus (southern platyfish): 102224897
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Entry
102224897 CDS
T02923
Symbol
synpo
Name
(RefSeq) synaptopodin isoform X1
KO
K21112
synaptopodin
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
102224897 (synpo)
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Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
102224897
NCBI-ProteinID:
XP_023184350
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All DBs
Position
23:21569506..21594035
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AA seq
1177 aa
AA seq
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MKTTESLGLGQSGGIHGPSVNPPSFHTISHITHGLLGCHPTPLPAINQKKDNIRQDLSRS
ASLSEKELKEARLKSHIIAAQLTIPSNSGSSSRGVQLFNRRKQRVNAFTLESCGQGSEVD
KTENVKSDSLSNKQTWAERSCEDKDTDLNLNNNKLHFLPPASNPSTGGIMDEENKNFIKD
EDTENYDIQERHFLPVKEEPEEEDDIKDKIHEVLEDDARHQTPLGSNDSHPAVMAHVERK
TETNEGHPAVVPSEKLLNGCHSTSGSERISLVSPSKQTPAFLNRTARPFFSPPTVLSPDS
VSPATDIPPPPSYATPPLPSSTQPVTFSPPPPPPSYPTPPLPAFTNQPPQTFYSGPLPMS
PPMSSPCLSPSNFPVSQHPPAPHCGPLTAPKPSIFVPQSTGERKLITPIKTGILEEGAAR
RANKKSMFTFKEKPVVAPNPELLSLVQGADERKKHGHRSVPEPAPEEELLALGAEASNFL
AKAEEKTTGARAPEWASCLKSSKTRPRLDHRPEQSLTNVSGKGAELFAKRQSRMEKYVVE
NQNPGQIRSPSPTMSLPPSWVYPSNMPGRVKAIAKNSEVSAQISQNLKAQQAVKQKPKPK
VAVPEPVPEPPTTLENGCSKIEMDLARHRPYQLNSSLFVFNPVKDPISTLPRGAPQAKNL
LSSQSFSRHTSLPNTSPSYYGSMSPQLPLTSPRGSEYPANPASPHARITSLMSPFSPERV
SSPRSGVQAPKPTFSAKKAGITPQESEESSPVEITGETSRATSTPSLTRRFSSPANQATR
KWISSSQTSQSPTTTSGSICSVKSPVNLSSNARSQSFMSSQNSQFSSVNSTSASRPSQAA
TVTSPCSPPWGSRCQSPAVSQSSTTTSIPFSKPSENAKTHYPISPPWGSRCQSPSVSNNN
KTSSASAFSMSRPSITSVATSTISPPWGSRCQSPAVSQNTQSSTFSPGPTCRPSQTPPWG
SRCQSPSVSQNNQSSAVSVSPSRPLQIFTATSPVCPPWSPRSQSPALFQSSSSFQSTNPL
HTTATASSPRQQKDNRCTSQIVNNLDSKANHRLLAKNIINAAKRKNSPSPGALSSHGLPI
SPVGNFQNDWQKPPISPFQQRSLGAQSPTFTSPPVTPTQRICSPVRLYNTRSLTDSDASV
ESEDSGLRSPGLHSYNTCPRGWGGSLRVKRSTVSTDL
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccactgagagtttaggtctcggtcagtctggtgggatacacggcccctctgtt
aatcccccgtctttccataccatttcacatatcacccacgggctcctgggctgtcatccc
actcccctcccggccatcaaccagaagaaagataacatccgacaggatctgagcaggagc
gccagtttatcggagaaagagctgaaggaggcacggctgaagagtcacatcattgctgct
cagctcaccatcccctccaactccggctccagctccaggggtgtgcagctctttaatcgg
cgcaagcagagagtgaacgccttcacactcgaaagctgcggacaagggtcagaggtggac
aaaactgagaatgtgaaaagtgattccttgtccaacaagcaaacctgggcagagagaagc
tgtgaggataaggacacagacctgaacttaaataataataagttacactttttgccacct
gcaagcaacccttcaactggtggcataatggatgaagaaaataagaattttatcaaagat
gaagacacggagaactatgatatccaggaaagacatttcctcccagtcaaagaagagccg
gaagaagaggacgacataaaggataaaattcatgaggttctagaggacgatgctagacac
caaactcctctgggaagtaatgactctcatccagctgtgatggcacatgttgaaaggaag
acagaaacaaatgagggccacccagcagttgttccctctgaaaagctccttaatggctgt
cacagcacctctggttcagagaggatttccttagtctcaccctccaagcagacgccagcc
ttcctcaacagaacggctcgacctttcttctcaccaccaactgtcctctctccagattca
gtcagtcctgctacagacatcccacctcccccgtcttatgccactcctcctctcccttct
tccactcaacctgtcacattctctcctccacctccaccaccatcatacccaacacctcct
ctgccggccttcacaaaccaacctccacagacgttctactctggtccacttccaatgtct
cctcccatgtcatctccatgcctttcgccatccaactttcctgtttcccagcacccacct
gcaccccactgtggccctctgacagctccaaagccttccatctttgttccacagtccact
ggagaaaggaagctgataacaccaatcaaaacaggaatactagaagaaggcgcagccagg
agggcaaacaagaagtcaatgtttacatttaaagagaagccagtggttgctccaaaccct
gagctgctctctctggtgcaaggagcggatgaaagaaagaaacatggacatagatctgtc
cctgaaccagcacctgaagaggagttactggctttgggagcagaagcttccaacttcctt
gcgaaagcagaggaaaagacaacgggagcaagagccccagagtgggcatcctgtctcaaa
agctcaaagaccagaccaaggctagaccatcgtccagagcagagcctcacaaatgtgtca
ggcaagggggctgaattgtttgccaagcgtcaatcaaggatggagaaatatgttgttgag
aatcagaatccaggacaaattaggtctccctcccccacaatgtcgttaccaccatcctgg
gtttacccatcgaacatgccaggaagggtcaaagccattgccaagaactccgaagtgagc
gcacagatttcgcaaaatctaaaggcccagcaagccgtcaagcaaaaaccaaaaccaaaa
gttgcagtaccagagccagttccagaaccaccaaccactttagaaaatggttgctccaag
atagagatggaccttgcaagacaccgtccctatcagctcaactcttccctctttgtcttc
aacccagtcaaggacccaataagcacattacccagaggagcaccacaagccaagaaccta
ctcagcagccaaagtttttctagacacacttctctacctaacacttcaccatcttattat
ggtagtatgtcacctcagttgcctctcacctccccaagaggatcagaatacccagcaaat
ccagcttccccacatgcgaggatcacttctttgatgtctcctttttctccagaacgagtt
tcctcccctcggtctggagttcaggcaccaaagccaacgttttctgccaagaaggcagga
attacaccacaggaatcagaggagtcatcccctgttgaaattactggtgaaacatccagg
gcaaccagtacacctagcctaaccagacgtttcagcagcccagcaaaccaagcaactaga
aaatggatctccagctctcaaacaagccagtcaccaaccaccaccagtggatctatctgt
tctgtcaagtctcctgtcaatttgtccagtaatgcaagatcccaatcttttatgtcgagt
cagaatagccaattttcctctgttaattccacttctgcatccaggccctcccaagcagct
acagtcacttctccatgctctccaccttggggttccagatgtcagtccccagctgtcagt
cagtcctccactactacctccattcctttttccaaaccctctgaaaacgctaaaacccat
tatcctatttctcctccttggggttcaagatgtcagtccccatctgtgagcaataataac
aagacctcctctgcttcggctttctccatgtccagaccctccatcacatctgtcgccaca
tctacaatctcccctccctggggatcaaggtgccaatccccagcagtgagtcagaatacc
caatcttccaccttttcccctggtcctacatgcagaccttctcaaactcctccttgggga
tcaagatgccagtcaccttccgtaagccagaataatcaatcctccgctgtctctgtttcc
ccatccagacctctgcaaatatttacagccacatctcctgtttgccctccatggagcccc
cgctcccaatcacctgcactgtttcaaagcagctcatcctttcaatccactaatcccctg
cacacaacagccactgcctcctctccacgacaacaaaaagacaatcgctgcacgtcccag
attgttaacaacctagactcaaaagcaaatcaccgtctccttgcaaagaatattataaat
gcagccaaacgtaaaaacagcccctcccctggagcactgagcagtcacggcctccccatt
tcacctgtgggaaactttcaaaacgactggcaaaaaccaccaattagccccttccagcag
aggtccttgggtgcacagtctcccaccttcaccagccctcctgtcaccccaactcagaga
atctgctcacctgtaaggctctacaacacccgttctctgaccgactcagatgcctctgtt
gagtccgaggactctgggctcaggtcgcctggcctacactcctacaacacctgcccccgt
ggctggggcggcagcctgcgggtcaaaagaagtactgtctccactgacctgtga
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