Xiphophorus maculatus (southern platyfish): 102225611
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Entry
102225611 CDS
T02923
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03015
mRNA surveillance pathway
xma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102225611 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
102225611 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102225611 (pabpc4)
03041 Spliceosome [BR:
xma03041
]
102225611 (pabpc4)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102225611 (pabpc4)
mRNA cycle factors
Stress granule specific factors
102225611 (pabpc4)
Spliceosome [BR:
xma03041
]
Complex C
Other components
Complex C specific factors
102225611 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RBD_DEAH11
RRM_5
RRM_7
RRM_10
RBD_RDR6
RRM_3
OB_RNB
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
102225611
NCBI-ProteinID:
XP_023207891
Ensembl:
ENSXMAG00000019007
UniProt:
M4AX67
LinkDB
All DBs
Position
19:complement(12557925..12569685)
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AA seq
626 aa
AA seq
DB search
MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIDKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFEKYGKTLSVKVMADSSGKSRGFGFVSFEK
HEDASKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRTT
YYAPNQLAQMRPNPRWQQQGGRGQGGFQGMPNSLRQPGPRANLRHMTPSSGAQGPRGAGQ
TMGPRQSMGVPGPRAMPPYKYATSVRNPNPQVVQPIAVQQTQPAVHVQGQEPLTASMLAA
APPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVA
VLQAHQAKKDATQKVGGMATTAAATS
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagcgacggggagttatccgatggcttctctctacgttggcgacctgcaccca
gatataacggaggctatgctgtacgagaagttcagccccgccggaccggtgctctccatt
cgggtctgcagagacatgatcacccggcgctccctcggatatgcttatgtgaacttctcg
cagcccgctgacgcggagagagccctagacaccatgaactttgacgtggtgaaagggaag
ccaatcaggatcatgtggtcgcagagagatccctcactcaggaagtccggcgtgggcaat
gttttcatcaagaaccttgacaagtccatcgacaacaaagccctgtacgacaccttctct
gcctttggcaacatcttatcctgcaaggtggtgtgtgatgaaaatggatcaaagggctac
gcgtttgtccacttcgagacgcaggacgcagcagatcgcgccattgacaagatgaacggc
atgcttctgaatgaccgcaaggtgtttgtgggtcgttttaaatctcgaaaagaacgggag
gctgaactcggtgccaaagccaaggagtttaccaatgtttacatcaagaactttggcgat
gacatggacgacgaacgactgaaggaactttttgaaaaatatggtaaaaccctgagtgtg
aaagtgatggcagattcctccggaaagtctaggggttttgggtttgttagcttcgagaaa
cacgaggatgctagcaaggctgtggaggaaatgaatggcaccgagctgaatggtaagacc
gtctttgtgggcagagctcagaagaagatggagcggcaggcggagctgaagaggaagttt
gagcagctcaaacaagaacgaatcagtcggtatcagggagtcaatctttacataaagaac
cttgacgacacgatcgatgatgaaaaattgcgtaaggagttttctccatttggctccatt
acaagtgctaaggtgatgttagaagaaggccgctcaaagggcttcggcttcgtctgcttc
tcttctcctgaggaggccaccaaggctgtgacagagatgaacggacgtatcgttggctct
aaacctctgtacgtcgctcttgctcagcgcaaagaggagcgcaaagctcacctcaccaac
cagtacatgcagcgtattgctggcatgagggccatgccggctaatgccatcatcaatcag
ttccagcccacaagtggctactttatgcctgctgtgccccaggcccagaacaggacgaca
tactatgcaccgaaccagctggctcagatgcggcccaacccacggtggcagcaacaaggt
ggtagaggtcaaggcggtttccaaggaatgcctaactcactgcgtcagcctggaccccgg
gccaatctcagacacatgactcctagcagcggtgcacagggcccacgaggtgccggtcag
accatgggtcctcgtcagtcaatgggagttcccggccccagggccatgcctccttacaaa
tatgccactagtgtccgtaaccccaatccccaagtggtgcaaccaattgccgtacagcag
actcagccagctgtgcatgttcagggccaggagccgctcacggcctccatgctggctgct
gcgccgcctcaggaacagaaacagatgctaggggagcgtttgttcccgttgattcaggcc
atgcatgccaacctggcaggaaagatcactggcatgcttctggaaatcgacaactcggag
ctgctgcacatgctggagtcgcatgagtctctccgttcaaaggtggaggaagctgttgca
gtgctgcaggcccatcaagcaaagaaggatgctactcagaaagtaggtggcatggcgact
actgctgctgctacatcctaa
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