Xiphophorus maculatus (southern platyfish): 102225839
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Entry
102225839 CDS
T02923
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xma03016
]
102225839 (trub1)
Enzymes [BR:
xma01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
102225839 (trub1)
Transfer RNA biogenesis [BR:
xma03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
102225839 (trub1)
Prokaryotic type
102225839 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
GAIN_A
Motif
Other DBs
NCBI-GeneID:
102225839
NCBI-ProteinID:
XP_005814416
Ensembl:
ENSXMAG00000014701
UniProt:
M4AJT0
LinkDB
All DBs
Position
10:24201689..24205713
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AA seq
277 aa
AA seq
DB search
MAGNVSGAAGPISSLSKLQSLNGLFAIYKKQGPTSADVLNKFKETLLREAGVQNPNSRKR
KKQYLKMGHGGTLDSAASGVLVVGIGNGTKKLSTMLTGSKKYVAVGELGKATDTFDATGT
VIMEKEFEHITRLDMEEKLKAFTGDIMQVPPLFSALKKDGQRLSVLLKKGHQVEAKPARP
VTVHSLTLQEFKPPLFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELVRMKQGQFTLQD
HVLHEEQWTLQSVVGALQPCPEEDQRMDSPRSPQIPT
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggctgggaatgtgagcggcgcagcgggaccaataagttctctgtctaagcttcagtct
ttaaatggcttgttcgccatatataagaaacaagggccgacatctgctgatgtgttaaac
aagttcaaagagactttgctcagagaggcgggagtgcagaacccaaacagcagaaagagg
aagaagcagtacctgaagatgggccacggagggaccctggacagcgctgccagcggggtc
ttggttgtcggtattgggaacgggacaaaaaagctcagcacgatgttgactggttcaaag
aaatacgtggctgttggagaactgggaaaagcaacagatacctttgatgccactggaacg
gtgatcatggagaaagagtttgagcacataaccaggctggacatggaggagaagttaaaa
gcttttaccggtgacatcatgcaggttcctccactcttctccgccctgaagaaagacggc
cagcgtctgtctgtgttgttgaagaaaggtcaccaggtggaggccaaacctgcacggccc
gtcaccgtgcacagcctgactctgcaggagttcaaacctcctctcttcactctcgatatc
gaatgcggtggagggttttatgtcagaagcctggtggacgacctgggaaaagctctgtcg
tcatgtgctcatgtgaaggagctggtcaggatgaagcagggccagttcaccctgcaggat
cacgtgctgcatgaggagcagtggacgctgcagagcgtcgttggggcgctgcagccctgc
ccagaggaggaccagaggatggactctcccagatccccacagatccctacctaa
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