KEGG   Xiphophorus maculatus (southern platyfish): 102226006
Entry
102226006         CDS       T02923                                 
Symbol
polr2i
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9 isoform X2
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma03020  RNA polymerase
xma03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    102226006 (polr2i)
  09124 Replication and repair
   03420 Nucleotide excision repair
    102226006 (polr2i)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xma03021]
    102226006 (polr2i)
   03400 DNA repair and recombination proteins [BR:xma03400]
    102226006 (polr2i)
Transcription machinery [BR:xma03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     102226006 (polr2i)
DNA repair and recombination proteins [BR:xma03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      102226006 (polr2i)
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Ogr_Delta Zn_ribbon_recom Zn_Ribbon_TF Zn_ribbon_GRF_2 HVO_0758 Zn_ribbon_NrdR GpA_ATPase Lar_restr_allev SR1P Zn_ribbon_Top1 DZR
Other DBs
NCBI-GeneID: 102226006
NCBI-ProteinID: XP_005808344
Ensembl: ENSXMAG00000001010
UniProt: A0A3B5R6F0
LinkDB
Position
18:14979506..14982098
AA seq 126 aa
MDLEGGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKIT
HEVDELTQIIADVAQDPTLPRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHC
GHRWTE
NT seq 381 nt   +upstreamnt  +downstreamnt
atggatttagaaggtggaacatacgagccgggatttgttggaatacggttttgtcaagaa
tgtaataacatgttgtaccctaaggaagacaaagagaaccgcatcttgctgtatgcgtgt
agaaactgtgactatcagcaggaggctgacaacagctgcatctatgtcaacaagatcacc
cacgaggttgatgaactgacacaaatcatcgctgatgtagcccaggatccaacgctgccg
agaacagaggatcacccctgtccaaaatgcggtcacaaggaggcagtgttcttccagtct
cacagtatgaaggctgaggatgctatgcgtttgtattatgtctgcacggcccctcactgt
ggacaccggtggacagagtaa

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