Xiphophorus maculatus (southern platyfish): 102226228
Help
Entry
102226228 CDS
T02923
Symbol
npc1
Name
(RefSeq) Niemann-Pick C1 protein
KO
K12385
Niemann-Pick C1 protein
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
xma04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
102226228 (npc1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
102226228 (npc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xma02000
]
102226228 (npc1)
Transporters [BR:
xma02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
102226228 (npc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
Motif
Other DBs
NCBI-GeneID:
102226228
NCBI-ProteinID:
XP_005800031
Ensembl:
ENSXMAG00000016426
UniProt:
A0A3B5R7Z4
LinkDB
All DBs
Position
6:complement(18668153..18688021)
Genome browser
AA seq
1277 aa
AA seq
DB search
MISERGMGPTAGRLSFTVVFFIILLSGCYRWVEAQHCVWYGECDESEKVPGKKYNCNYTG
PPVPLNPEGYELLTELCPGYNYGNRSLCCNETQLHTLKGSLQLPLQFLSRCPSCFYNLMN
LFCELTCSPHQSQFMNATKFKGKNVVEVEYYIGKTFANAMYNACQDVQAPSSNVKALSLL
CGKDAQECNATNWIQYMFSIDNGQAPFPIIPVFSDVEVSGYTPMNNKTYACTEGLEDGSG
PCSCQDCAAACGPKPVPPPLPPPWTILGMDAMSVIMWIAYMAFLLIFAGVLVGAWCFRKR
TITSEYGPILDSNNPLSLNSDNHNQENASCCETLGERFENLLRTFFSCWGSFCVRHPSVV
LLGSFVLVTACSGGLVYMRITTDPVELWSSPASQAHQEKSYFDEHFGPFFRTTQLIITTP
INDTYIYSPYFGGSDVPFKAILFKDILHQVLDLQLEIENLVAEHDGKNITLKDICLAPLA
PYNNNCTILSVLNYFQNSHAVLDHSKGDEFFVYADYHSHFLYCVSAPASLNDTTVLHDPC
LGTFGGPVFPWLALGGYDETNYNNATALVITFPLNNYLNDSVKMGQALAWEKEFIKFMKN
FNNPNLTIAFSAERSVEDEIDRESNSDISTIVISYAIMFIYISLALGHIHSFRRLLVDSK
ISLGIAGILIVLSSVSSSLGIFSYAGVPLTLIVIEVIPFLVLAVGVDNIFIVVQTFQRDE
RMPQEELHHQIGRILGEIAPSMFLSSFSETVAFFLGGLSNMPAVRTFSLFAGLAVFIDFL
LQISCFVSLLGLDAKRQEGNRLDICCCVKLPERQEIKTEGFLFRFFKKVYAPFILKEWVR
PIIVAVFVGMLSFSIAVVNKVEIGLDQKLSMPDDSYVLDYFKNLSEYLHTGAPVYFVVED
GLNYSSPEGQNSVCGGVGCNNNSLVQQIYSASIISNYTTIAYTPSSWLDDYFDWVKPQST
CCRFYNNTGAFCNASVVNSSCVSCRPMTQSGKQRPEGEDFMRFLPMFLSDNPNPKCGKGG
HAAYATAVDLYPNNMGVGATYFMTYHTILKESPDFIDALKMARNLANNISQSMDHKVFAY
SVFYVFYEQYLTIAYDTALNLCVSLGAIFVVTTVLLGFELFSALMVSITIAMILVNMFGV
MWLWDISLNAVSLVNLVMSCGISVEFCSHIVRAFSVSMKTNRVERAEEALAHMGSSVFSG
ITLTKFGGILILALSKSQIFQVFYFRMYLAIVLLGATHGLIFLPVLLSYIGPSANKAKVF
AANQRLAGTEREPLIKH
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgatttcagagagagggatggggcccacagcagggaggctgagtttcactgttgtcttc
ttcattattctgctgtcaggatgctatcgatgggttgaggcccagcactgtgtttggtat
ggtgagtgtgacgagtctgaaaaggttcctggcaaaaaatacaactgtaactacaccggt
ccccctgttccactaaaccctgagggctatgagcttctaacggagctctgtcctgggtat
aactatggaaaccgaagtctctgctgcaatgagacccagctgcacacactcaaagggagt
ctccagctgccccttcagttcttgtctcggtgtccttcatgtttctacaatctgatgaac
ctgttctgtgagctgacatgcagtccacatcagagtcagtttatgaatgccaccaagttt
aaggggaagaatgtagtagaagtggagtactatatcggaaagacatttgctaatgctatg
tacaatgcttgtcaggatgtgcaggcaccttctagcaatgtgaaagccttatcgcttcta
tgtggcaaggatgctcaagaatgcaatgcaaccaactggatccaatacatgttcagtatt
gacaatggccaggctccatttcctatcatccctgtgttctctgatgtggaagtttccggt
tacacgcccatgaacaacaaaacgtatgcctgtacagaaggcttagaagatggttcaggt
ccatgctcctgtcaggactgcgcagcagcctgcggccccaaacccgtcccccctcctttg
ccccctccctggacaatccttggcatggatgccatgtcggtcatcatgtggatcgcctac
atggccttcctgctcatctttgcaggagttttagtcggggcttggtgtttcaggaaaagg
accatcacatcagagtacggccccattttggacagcaacaacccgctttccctcaatagt
gataatcataaccaagaaaatgcatcgtgctgtgaaacgctgggcgaacgctttgagaat
ctcttgcgaactttcttcagctgctggggttctttctgtgtccgtcatccatccgtggtc
ctgctgggcagcttcgtattagtgaccgcttgcagtggaggcttggtctacatgcgcatc
accaccgaccccgttgagctttggtcgtcgcccgccagccaggctcaccaggagaagagc
tatttcgatgagcactttggaccgttcttcagaacaacgcagctcattataactactccc
atcaatgatacttatatctactccccgtattttggagggtcagatgtcccgtttaaagcc
atcctgttcaaagacatccttcaccaggtgctagacctgcaacttgaaatcgaaaacctg
gtagctgaacacgacggcaaaaacatcacgttgaaggacatctgcttggctcctctggcg
ccgtacaacaacaactgcaccatcctgagtgttctcaactactttcagaacagccacgcg
gtgctggaccacagcaaaggagatgagttttttgtgtacgcggactatcacagccacttc
ctctactgcgtcagtgctccagcatcactcaacgacaccactgttcttcatgatccctgc
ttaggaacgtttggtggcccagtcttcccttggctggcactcggaggttatgacgagaca
aactacaacaatgccacagctcttgtgatcaccttcccgcttaacaactacctgaacgac
tcggtcaagatgggccaagctcttgcctgggaaaaagagttcatcaagtttatgaagaac
ttcaacaatcccaatctgaccatagccttcagtgcagagaggagcgttgaagacgagatc
gacagagagagcaacagtgacatcagcaccatcgtgatcagctacgccatcatgttcatc
tacatctccttggctttgggccacatccacagtttcagaaggctgctggtggactcgaag
atatctctaggtatagctggcatcctgattgtgctcagctctgtgtcttcatctctgggg
atcttcagctatgcgggtgtcccacttacactcatcgtgatcgaggtcattcccttcctt
gttctggctgttggggtcgacaacatcttcattgttgtgcagactttccagagagatgag
cggatgcctcaggaagagcttcaccatcaaatcggccgtattcttggagaaatagctccc
agcatgtttctctcttccttctcagagactgtggcctttttcctgggtggcttgtccaac
atgccggctgttaggactttctctctgtttgctggcttagctgttttcattgatttcctg
ttgcagatcagttgctttgtcagcttgcttggcttggatgccaaaagacaggaggggaat
cgacttgacatctgctgctgcgtgaaactgccagaacgtcaggaaataaagacagaaggc
ttcctcttccgctttttcaagaaagtctatgctccattcattcttaaagagtgggttcga
ccgatcattgtggcggtgtttgtgggtatgctgtccttcagtattgcggttgtcaataaa
gtggaaattggactagaccagaagttatctatgcctgatgactcgtatgttctggattac
ttcaagaacctgagcgagtacctccacaccggagctccggtatactttgtagtggaggat
ggactcaactacagtagcccagagggccaaaattctgtgtgtggaggagtgggatgtaac
aacaactctttggtgcagcagatctattcagcctcaattatcagcaattacacaaccatt
gcctacacaccatcgtcttggctggatgattactttgattgggtgaagcctcaatcaacc
tgctgtcgcttctacaacaacactggagctttctgcaatgcctcagttgtgaactcgtcc
tgtgtatcctgtcggcccatgactcagagtggaaagcagagacccgaaggcgaagacttc
atgcgctttctgcccatgttcttgtccgacaatcctaaccccaaatgtggaaaaggcgga
catgcagcttatgccacagcagtcgatctgtatcccaacaacatgggtgtcggagcaact
tacttcatgacataccacaccatcctaaaggagtctccagacttcatagatgctttgaaa
atggcccgaaacctggccaacaatatcagtcagtccatggatcacaaagtctttgcctac
agcgtcttctacgtgttttacgagcagtacctcaccattgcctatgacacggctctgaat
ttgtgcgtgtcgctgggggccatatttgtggtcactacagtgctgctgggcttcgagctg
ttttcggcgctgatggtcagcatcaccatcgccatgattctggtcaacatgtttggcgtc
atgtggctgtgggacatcagcctcaacgcggtgtctctagtgaacctggttatgagctgt
ggaatctccgtggagttctgcagtcacattgtgcgagcgttttccgtcagcatgaagacg
aacagagtggagcgggcggaggaagccttggctcatatgggcagctccgtgttcagtggg
atcacattaacaaagtttggagggattttaatcttggcgttgtccaagtcgcagatcttc
caggtcttctacttcaggatgtacttggccatcgtgttgctcggggcaacgcacggcctc
atcttcctcccagttcttctaagctatataggtccgtcggcgaacaaagcgaaggtgttt
gctgcgaaccagcgcctcgccggcacagaaagggagcccctcatcaaacattag
DBGET
integrated database retrieval system
