Xiphophorus maculatus (southern platyfish): 102226500
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Entry
102226500 CDS
T02923
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03020
RNA polymerase
xma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102226500 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
102226500 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xma03021
]
102226500 (polr2a)
03400 DNA repair and recombination proteins [BR:
xma03400
]
102226500 (polr2a)
Enzymes [BR:
xma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102226500 (polr2a)
Transcription machinery [BR:
xma03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
102226500 (polr2a)
DNA repair and recombination proteins [BR:
xma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
102226500 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
102226500
NCBI-ProteinID:
XP_005804864
Ensembl:
ENSXMAG00000015687
LinkDB
All DBs
Position
14:12857173..12872138
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGVISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKILRCVCFFCSKLLVDSN
NPKIKEILGKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEPQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPFKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSNKAFEKKFRFDCTNERALRRVLQEDVVKDVLTNAHVQSVLEKEFEKMRED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVEGVHELSKKLVI
VNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAYDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPVSPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggtgacagcgcatgcccattgcgcacgatcaagagagttcag
ttcggcgtcatcagcccagatgaacttaaacggatgtcggttaccgaagggggtatcaaa
taccctgaaacaacggaaggaggacgtcctaagcttggtggccttatggatccaagacaa
ggagtcatagaacgcagtgggagatgtcagacatgtgcaggcaacatgactgaatgtccg
ggccacttcggacacatagagctggcgaagccggttttccacgtcggcttcatatcaaaa
ataatgaagattcttcgatgcgtctgcttcttttgctcaaaactgttggtggattccaac
aacccaaagatcaaagaaatccttgggaaatccaagggccagccaaggaagcgtctaacc
cacgtctacgagctgtgcaaaggcaaaaacatatgtgagggaggggaagagatggacaac
aaatttggaatggagccacaggagacggaggaggacattaccaaggagaagggtcacggt
ggctgcgggcgctaccagccgcgcatccgacgctcgggcttggagctgtacgccgagtgg
aagcacgtcaacgaggattcccaggagaagaaaatcctgctgagtcccgaacgcgttcac
gagatcttcaagcgcatctcagacgaagaagacatcatcttgggcatggatcccaagttc
gcccgtccagaatggatgattgtgaccgtgctgcctgtgcctccgctggccgtgaggccc
gccgtggtcatgcagggctcggctcgcaaccaggacgatttgacccataagctggcggac
attgtgaagatcaacaaccagctgagaagaaacgagcaaagtggtgcagctgctcacgtc
atcgccgaggatgtgaagctccttcagtttcacgtggccacgatggtcgacaacgaatta
ccaggcctgccgagggcaatgcaaaaatctggccgccctctcaaatccataaagcagcgt
ctaaagggaaaagaggggcgagtgaggggtaacctgatgggcaaacgcgtggacttctcg
gcccgaaccgtcatcacccctgaccccaacttgcagatcgaccaagtgggcgtgccacga
tccatcgcggccaacatgaccttccccgagattgtcacaccctttaatatcgacagattg
caagagttggtccggagaggcaacagccagtaccctggggcaaagtacattatccgagac
aacggagacagaatcgacctgcgattccaccctaaaccaagtgaccttcatctgcaaatc
ggctacaaggtggaaaggcacatgtgcgacggtgacatcatcatcttcaaccgacagccc
acactacataaaatgtccatgatggggcacagagttcgaatcctgccttggtcgacattc
cgactcaacctcagtgtcaccaccccttataatgctgacttcgacggggacgagatgaac
ctccacctccctcagtcgctggagacgagggcggagattcaggagctggccatggtgccg
cggatgatcgtcacgccccagtccaaccggcccgtcatgggtatcgtgcaggacaccctc
accgccgttcgcaagttcactaaaagagacgtgttcttggagaggggtgaggtgatgaac
ctcctgatgttcctgtccacctgggacgggaagatgcctcagccggctattctcaaaccg
cgtccgctgtggacggggaagcagatcttcagcctcatcattccaggacacatcaacgtg
atccgcacccacagcacgcaccccgacgatgaagatagcggcccgttcaaacacatctcc
cctggtgacaccaaggtcatagtggagaacggggagttgatcatgggcatcctgtgtaag
aagtctctgggaacctcggctggctccctcgtccacatctcctacctggagatgggccac
gacatcaccaggctcttctactccaacattcagacggtggtcaacaactggctgctcatc
gagggtcattccattggtattggagactccattgctgatgctaagacgtacctcgacatc
cagaacaccatcaagaaggccaaacaggatgtgatagaagttattgaaaaagctcacaac
aacgagctggaaccgacacccggtaacaccttgaggcaaaccttcgagaaccaggtgaac
cgtatcctgaacgacgctcgtgacaaaacgggatcctccgctcagaagtcgctgtccgag
tacaacaacttcaagtccatggtggtggcaggctccaagggctcaaagatcaacatctcg
caggttatcgccgtggtgggccagcaaaacgtggagggtaagcgaatccccttcgggttc
aagcaccgcacactgcctcacttcatcaaggatgactacggtcctgagagccgaggcttc
gtggagaactcctacctggctgggctgacgccgaccgagttcttcttccacgccatggga
ggcagagagggtctgatcgacacggctgtcaagaccgctgagacgggttatattcagcgt
cgtctgatcaaatccatggagtctgtgatggtgaagtacgacgccacggtgcgaaactcc
atcaaccaggtggttcagctgcgttacggcgaggacggcctggcgggagagaacgtcgag
ttccaaaacctggcgacgttgaagccctccaacaaggcgttcgaaaagaagtttcggttt
gactgcaccaacgagcgcgcgttgagacgggtgctgcaggaagacgtggtgaaagacgtg
ctgactaatgcacacgtgcagagcgtcttggagaaggagtttgagaagatgagggaggac
agggagatcctgcgggcgattttccccactggtgacagtaaggtggtgctgccgtgcaac
ctggccagaatgatctggaacgctcagaagattttccgaatcaacactcgaaccccaaca
gacctaaatcccctgcgagtggttgagggcgttcacgagctgagtaagaaactggttatt
gtcaatggcgacgatcctctgagcaggcaggcccaggagaacgccactctgctcttcaac
atccacctgcggtcgacgctctgctccaaacgcatgacggaggagttccgcctgtccacc
gaggcttacgactggctgctgggagagatagagaccaagttcaaccaatccattgcccac
cctggtgaaatggtcggcgcgctagctgcccagtcgctgggagagccggccacccagatg
accctgaacactttccactacgctggagtgtcggccaaaaatgtcacgcttggtgtgcct
cgtctcaaagagttgatcaacatctcgaagaggcccaagacgccgtcgctgaccgtcttc
ctgctgggtcaggcagcacgtgacgcggagagagctaaggacatcctgtgtcgactggag
catacaacgctcaggaaggtgactgccaacaccgccatctactatgaccccaaccctcag
aacaccgtggtggccgaggatcaggagtgggtgaacgtctactacgagatgccggacttt
gatgtgactcgcatttccccgtggctgctgcgcatcgagctcgaccgcaagcatatgact
gaccgcaaactgaccatggagcagatcgcagagaagatcaatgcaggttttggtgacgac
cttaattgcatcttcaacgatgacaacgctgaaaaactggtgctgcgaattcgaatcatg
aacagcgacgagaacaagtttcaagaggacgaggaggttgtggacaaaatggacgacgat
gtgtttctgaggtgcatcgagtccaacatgctgacggacatgactctgcagggcatcgag
cagatcagcaaggtgtacatgcatctgcctcagaccgacaacaagaagaagatcatcatc
acggaggatggagagttcaaggccctgcaggagtggatccttgagacggacggagtgagc
ctcatgagggtgctcagtgagaaggacgtggatcctgtcaggaccacctccaacgacatc
gtggagatcttcacggttttgggtatcgaagctgtccgaaaagctctggagagagagttg
taccacgtcatctcctttgatggctcctacgtcaactaccgccacttggctctgctttgt
gacactatgacctgccgcggtcacctgatggccatcacgcgtcacggcatcaaccgtcaa
gacaccggacctctcatgaagtgttcctttgaggagacggtggatgtgctgatggaggcg
tcctctcacggagagtgcgacccaatgaagggcgtgtcggagaacatcatgctcggccag
ctcgccccagcagggaccggctgctttgacctgctgctagatgctgagaagtgcaagtac
ggcatggagatcccgaccaacatcccgggcatcagcgtggcggggcccactggaatgttc
tttggctcggtgccgagccccatgagcggtatgtctcctgccatgacaccctggaacacc
ggagccaccccagcctatggagcatggtcccccagtgttggaagcggcatgacccctgga
gcagcaggtttctctcccagcgcagcgtcagacgcgagcggcttctctccaggttactcc
ccagcctggtctcccacaccggggtctccagggtctcctggaccagtcagtccatacatc
ccatctccaggtggagccatgtcaccaaactactctcccacctcccccgcctacgagcct
cgttctccagggggctacacccctcagagcccaggctactccccaacatcgccttcctac
tcccccacttctccctcttactcccccaccagccccaactacagccccacgtctccatcg
tactcccccacttcacccagttactccccgacgtctccctcttactccccaacgtctcca
tcttactccccaacgtctccctcctactcccccacttctccctcgtactctccgacgtct
ccgtcatattctccgacctctccgagctacagcccaacatcgccaagctacagcccgacg
tcgcccagctactcccctacttcaccctcctactcgccaacctcaccctcttactctccc
acttctccatcctactcccccacttccccttcctactcccctacgtctccttcctactct
ccaaccagtccgagctacagccccacatcgccgaactacaccccaacatcccccagttac
tctcctacctccccttcatactctcccacatcgccctcttactccccaacctcccccaac
tacacaccaaccagtccaaactactccccaacttcaccctcttattcccctacatctcca
tcctactccccctccagtccacgctacacccctcagtcgcccacttacacacccagctcg
ccgtcgtacagccccagctctccatcgtactccccaacctcacccaaatacaccccgacg
tccccctcatacagccccagctctccagagtacacccccacctctccaaaatactcccca
acgtcgccgaagtactcgcctacatcaccgaagtactcccccacctcccctacctactcc
ccaacaactccaaaatacagccccacctcccccacctactcccctacctcccccacgtac
acccctaccagccccaaatactctcccacctctcccacttactccccaacttcgcccaag
tactcgcccacgtctccgacgtactcgcctacgagccccaaaggctccacctacagcccc
acctcccccggctacagccccacctcccctacctacagcccggccatcagccctgatgac
agcgatgaggaaaacaactga
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integrated database retrieval system
