Xiphophorus maculatus (southern platyfish): 102226635
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Entry
102226635 CDS
T02923
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04382
Cornified envelope formation
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
xma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102226635 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102226635 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102226635 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102226635 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xma04147
]
102226635 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102226635 (col4a2)
Exosome [BR:
xma04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102226635 (col4a2)
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102226635 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102226635
NCBI-ProteinID:
XP_023192934
Ensembl:
ENSXMAG00000012179
LinkDB
All DBs
Position
7:complement(13024246..13086522)
Genome browser
AA seq
1671 aa
AA seq
DB search
MSATMQRQQDRAHTNLRVLLLCLFLAALASTVQAGGKKHSGPCGGRDCSGGCKCFPEKGA
RGLPGLFGPQGPQGPPGRPGDPGIQGHKGQKGDQGTGGFIGPKGSTGMTGVPGFSGNDGI
PGHPGQAGSRGKPGADGCNGTKGELGFPGLPGFDGGPGNPGVKGRKGEKGDSLEVSVYMK
RFRGDPGRPGEDGFPGPPGPQGQEGSRGPVGPKGPPGPPGPRGPKGTMTKVLKGVKGETG
DIGPQGLPGNYTTQQRQPITGPSGFPGDKGERGDLADNLDGKGETGIMGMPGPRGESGAN
GPPGRKGEPGYPGLNGREGPKGGTGDPGELISSGFPWSAGGLPGPRGETGPDGERGRIGD
QGSPGPPGRPASDTQQQIWDFFGPFGAKGEQGDKGLPGDQGRSAVLPGPKGSDGSPGSRG
PPGPRGSWKEFFKGDEGPRGRPGNAGVKGFKGNHGECQCSGENFRPGLPGPAGERGDPGM
TGEFGYEGDMGDQGPRGADGFPGFAGLSGFPGPKGRKGETSFAREKGYPGEPGDPGIDGV
VGLHGSPGPNGLHGLSGNRGPPGEGPWGERGDKGFPGWPGRPGSAGLVGTPGENFVGIKG
QHGPPGDDGLAGYDGVQGTPGSPGDCIPHGAGGQVDVTGVCEPIPGPPGQPGPPGLSGIA
GFPGAPGPRGFSGPQGVNGEKGEQGELGRGGTPGPRGFPGPRGDLGTPGSKGSLGNPGVP
GMPGRYGSQGEKGPHGEVMGASPGPPGDPGLPGLRGQKGHLGDQGQPGFSGINGMPGMIG
FRGLKGAPGLPGEEGRPGPAGKYGFPGDPGRSGPPGPAGTTGEPGRTGERGTEGDSGPPG
PIGLKGMPGAYGDDGVIGARGLPGDPGQPGATGRPGLPGLKGKKGSHGTSGFEGVTGHSG
LKGFEGQRGGPGTPGEVGLKGLSGSKGERGEQGLQGKPGVMSPKMLLHIKGTKGEHGHQG
TPGFTGPRGTKGDQGVPGYDGTHGLPGDPSNEKGVDGDPGAQGLPGIKGMPGTPGNRGIQ
GFDGMHGDKGGKGSPGAYGHSGVQGKKGGKGDKGIRVDLPGSPGLRGEDGFTGEPGLKGL
LGPIGDLGITGFDGIEGVKGVAGNLGIEGYPGLDGQRGTPGNQGQKGFPGIPGEDGLPGV
PGFSGSKGYPGLQGLYGLDGLKGQKGVSGTPGLDIIGPAGETGVKGRKGESGIPNSQPGS
PGPSGLKGFQGNLGDFGQPGLPGLRGLQGPVGIPGLPGKTGDPGFPGPQGSQGYPGTSGP
PGLDAFPGEKGVPGENGFPGPTGTRGSRGDSGPAGYRGPDGISGKKGPKGDQGHMGIPGQ
TGLQGERGPVGPKGDTGLPGLPGVPGSQGRPPPSITIPGERGHPGLRGIQGPKGTSGGPG
PRGPPGEPGFMGPVGLKGMPGISGTPGVPGYRGEVGNVGHPGLQGMEGQRGRPGGPGLPG
MAGRSISVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGSCLPR
FSTMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEKEIQPYISRCSVCEAPSVAI
AVHSQDITIPQCPVGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIECNG
AKGTCHYFANKHSFWLTSIDQSFHTQPSSETLKAGQLLSRISRCQVCMKNL
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgaccatgcaaaggcagcaggatagagcgcatacaaatctgagggtgctgctt
ctctgcctcttcctcgccgccctcgcctcgacagtgcaggctggtgggaagaagcacagt
ggcccatgtgggggaagagactgcagcggtggttgtaaatgctttccagagaagggtgcc
aggggtcttccagggctttttggtcctcagggcccacaggggcccccagggcgaccaggg
gatcctggtattcaaggacacaagggacagaaaggtgaccaaggaactggtggcttcata
gggccaaaaggcagcacgggaatgactggtgtacctgggttctctggaaacgacggcatc
cctggccacccaggacaagctgggtccagagggaaaccaggagcagacggttgtaacggg
accaaaggagaacttggattcccaggattacctggtttcgacgggggccctggaaatccc
ggtgtaaaaggcaggaagggagagaagggggattctctggaggtcagcgtttacatgaag
cgcttcaggggagatccagggagaccaggagaggacggatttccggggcctccaggacca
caaggacaggaaggtagcagaggccctgtaggacccaagggtcctccaggtcctccaggg
ccacgtggaccaaagggcaccatgaccaaagtgttgaagggagtcaaaggagaaacaggg
gacatcggaccacagggcctaccaggaaactacactactcagcaacgtcagcctatcact
ggaccttctggattcccaggtgacaaaggagaaagaggagatctggcagacaacttagat
ggcaaaggagaaactggtataatgggaatgcctggccctcggggcgaaagtggtgcaaat
ggacctccgggtcgaaagggtgagcctggttatccagggctgaacggcagagaaggtcct
aagggaggcacaggtgatccaggggagctaatttcatcaggatttccctggtctgcgggt
ggtcttcctgggccccggggtgagacgggtccagatggagagagaggtcggatcggagac
caaggcagccctggaccacctggacgtcctgcctctgacacacagcaacaaatttgggat
ttcttcggcccttttggtgcaaagggggagcaaggagacaagggtctaccaggagaccaa
ggaagatcggctgtcttgccgggacccaaaggatctgatggaagtccggggagcagaggc
cctccgggacccagaggatcatggaaagagttctttaaaggagatgaagggccgagggga
agacctggcaatgcgggggttaaaggatttaaagggaatcatggagaatgtcagtgcagt
ggtgaaaatttccgccccggtttacctggtcctgccggtgagcgcggagatcctgggatg
actggagagtttggatacgaaggtgacatgggagaccagggtccccgaggcgccgatggg
tttcctggatttgctggcctcagtggttttccagggcccaaagggcgaaaaggagaaaca
agttttgcgagagaaaaaggataccctggagagcctggagaccccggaattgatggagtg
gtaggattacacggttctccaggcccgaatggtctacatggtctctctggtaaccgcggt
cctccaggcgaaggaccctggggagagcgtggagacaaagggttccccggatggcccggt
agacctggttctgctgggttagtgggaacaccaggtgaaaactttgtaggtatcaaagga
cagcacggtccacccggtgatgacggcctcgcaggctatgacggagttcagggaacgcct
ggaagtcccggcgactgtattccacatggagctggaggacaggtggatgtgacaggtgtt
tgtgaacctatcccaggtcctcctggtcaacctggacctcctggactcagtggaatagca
ggttttccaggagctcctggcccaagaggtttctcaggtccgcaaggagtcaatggagag
aaaggagaacaaggagagctcggcagaggcggcactcctggaccacgaggttttcctggt
ccccgtggagacttggggactcctggcagtaaaggctctttagggaatcctggtgttccg
ggtatgcctggccgatacggatctcaaggggaaaaaggtcctcatggagaagtaatggga
gcatcgcctggccctccaggtgacccaggactacctggcctgcgagggcaaaagggccat
cttggagatcaagggcagccagggttttcaggaatcaacgggatgcctggcatgatcggc
ttcaggggactgaaaggagccccaggcctgccaggggaagagggaagacccgggccagct
gggaagtacggcttccctggggatcctggcaggtcaggcccacctggtccggcagggaca
actggagagccaggaagaactggagagagaggaacagaaggtgactcaggtcctccaggt
ccaataggattaaaaggaatgccaggtgcttatggagatgatggtgtgattggagcgcgt
ggcctgccaggtgaccctggacaaccaggtgcaaccggacgaccaggccttccaggactc
aaaggaaaaaaaggtagtcatggaacgtctggttttgagggagtcacaggacattctggt
ctgaagggctttgagggacaaagaggggggcctggaacgcctggagaagttggcctgaaa
ggactgtcaggatcaaagggagagagaggcgaacaaggtctgcaaggtaaaccgggggtg
atgtcaccaaaaatgcttctccacataaagggaaccaaaggagagcacggccaccagggc
actccgggttttaccggaccaagaggtaccaaaggtgaccaaggtgtgccaggctatgat
ggaactcacggtcttccaggggaccccagcaatgaaaaaggagttgatggagatccaggt
gcacagggcctgccaggcattaaggggatgccagggacacctggaaacagaggcattcaa
ggctttgatggaatgcatggcgacaagggcggcaaaggaagccctggtgcctatggtcat
tcaggagtgcaaggaaagaaaggaggaaaaggtgacaagggcattcgagtggaccttcca
ggatctccaggactgagaggagaggatggatttacaggagaaccaggtctgaaaggtcta
cttggaccaatcggggaccttggtattaccggatttgacggcattgaaggggtaaaggga
gtagccgggaatctgggaatagaaggatacccagggttggatgggcagagaggaacgccg
gggaaccaaggtcaaaagggttttcctggaattcccggggaagatggactaccaggcgtt
cctggcttctccggaagtaaaggttaccccggcctacagggtctttatggattagatgga
ctgaaaggacagaagggtgtctcaggaacaccaggtctggacattattggacctgctgga
gaaactggagttaaaggaagaaaaggagaaagcggtattcccaacagccagccaggttct
ccaggtccatcaggactgaagggcttccagggaaatctgggtgactttggtcaacctgga
ctgccaggattacgtggccttcagggaccagttgggatcccaggcctaccgggaaagacg
ggggatcccggcttcccaggacctcaaggatcccaaggttatcctggaacaagtggaccg
cctggactggatgctttcccaggagagaaaggtgtaccaggcgaaaatgggttccccggc
cccactgggacgagaggatctcgaggagattcgggtccagcaggctacaggggccctgat
ggaatctctgggaagaaaggaccaaagggagaccaaggtcacatgggaattcctggacag
actggcttacagggagagagaggaccagtgggcccgaaaggagacactggattgccaggt
cttcctggagtgcctggcagccagggccgtcctccgccttccattacaatcccaggagaa
agaggccatccaggactacgaggtatccaaggcccgaaagggacttcaggggggccagga
ccgcgaggcccacctggagagccagggttcatgggacctgttggacttaaaggcatgcct
gggattagtggtactccaggagtgccaggttaccgcggcgaggtgggcaatgtggggcac
cctggtctccaaggcatggaaggtcaaagaggcaggcctggaggcccaggattacctggc
atggccggccgcagtatcagcgtgggctacctgctggtgaaacacagtcagtcagaacag
acgccaatgtgtccggtgggaatgtctaaactgtgggacggttacagtctgctgtacttg
gagggccaagagaaggcccacaaccaggacctcggtttggctggttcctgcctcccacgg
ttcagcaccatgccctttctgtactgcaaccccggggacatttgctactatgccagcaga
aacgataagtcctactggctgtcaaccactgctcccctccccatgatgcctgtagaagaa
aaagaaatccagccgtacatcagccgttgctcagtctgcgaggctccgtcagttgctatt
gcagttcacagtcaggacatcaccatcccacagtgtcctgtgggctggaggagcctgtgg
attggctactccttcctcatgcatacggcagcaggaaacgaaggcggcggtcagtccctg
tcatcgcccggctcctgcctggaggacttccgcacaacgccgttcattgagtgtaatgga
gccaagggcacatgccactactttgctaacaaacacagcttctggctgacatccatagac
cagtccttccatacccagccatcatcggagacactaaaagcaggccagctcctttcacgc
atcagtcgctgtcaggtctgcatgaagaacctgtga
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