Xiphophorus maculatus (southern platyfish): 102227207
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Entry
102227207 CDS
T02923
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-5-like isoform X1
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04080
Neuroactive ligand-receptor interaction
xma04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
102227207
04082 Neuroactive ligand signaling
102227207
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xma04040
]
102227207
Ion channels [BR:
xma04040
]
Ligand-gated channels
GABA-A
102227207
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
DUF5874
Motif
Other DBs
NCBI-GeneID:
102227207
NCBI-ProteinID:
XP_005812967
Ensembl:
ENSXMAG00000004208
UniProt:
A0A3B5PZ31
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Position
24:9089462..9111587
Genome browser
AA seq
460 aa
AA seq
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MDPHSALNNMTWLVLSLLLLLGCQNSLCQQSSEAQKEEDANEDSTVFTRILDSLLDGYDN
RLRPGLGENVTEIKTNIFVTSFGPVSDTEMEYTIDVFFRQSWKDERLCFKGPMEMLPLNN
LLASNIWTPDTFFLNGKKSIAHNMTTPNKLLRLKDDGTLLYTMRLTISAECPMQLEDFPM
DAHACPLKFGSYAYPVSEVVYTWTQGAAKSVVVAEDGSRLNQYHLIGQTADTEDIRTSRG
QYTVMMAHFYLKRKIGYFVIQTYMPCFMTVILSQVSFWLNRESVPARTVFGVTTVLTMTT
LSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRSWAWDGKKALEAQHP
KKRDPMVLSKKANNVCSAGVNYTPNLTKDASISTISNTTSVQLRGSESKLVDPKKTYNSV
SKIDKMSRIVFPVLFGTFNLVYWATYLNREPMVKGVVAST
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcattcagctcttaacaacatgacttggcttgtactttccctcctgctcctg
ctcggatgccaaaatagtctttgtcagcagtcgtcggaagctcaaaaagaggaggacgcc
aacgaggacagcacggttttcaccaggatcctggacagcctcctggatggctacgacaac
aggctccgcccgggactcggagagaacgtgacggaaatcaagacgaacatctttgtcacc
agcttcggtcctgtgtctgacacagagatggaatacaccatagacgtgttctttcgtcaa
agctggaaggatgagcgtctctgcttcaaaggccccatggagatgctcccattaaacaac
ctgctggctagcaacatctggactcctgataccttcttcctcaatggtaagaagtccatc
gctcacaacatgaccacacccaacaagctgctgagactgaaggacgacggaaccctgctc
tacacaatgaggttgacgatctcagcagaatgccccatgcaactggaggactttcccatg
gacgcccacgcctgcccgctcaagtttggcagctatgcctatccagtctcagaggtggtc
tacacatggactcaaggagccgccaagtctgttgttgtggcagaagatggttccagactc
aaccagtaccatctcattggacaaacagctgacacagaggacatacgcaccagccgagga
caatacactgtgatgatggcgcacttctacctgaagaggaagatcggatattttgtcatc
cagacgtacatgccatgtttcatgaccgtaatcctgtcccaggtgtcgttttggctcaac
agagagtccgttcccgcgcggaccgtgtttggggtgactacggtgctgactatgaccaca
ctcagcatcagcgccagaaactcgcttcccaaagtagcctacgcaacagccatggactgg
ttcattgctgtctgctatgctttcgtcttttcagctcttatcgagtttgccacagtgaac
tacttcaccaaaaggagctgggcctgggatggcaagaaagctctggaagcacagcaccct
aagaaacgagacccaatggtgctctcaaaaaaggccaacaatgtttgctcggcaggtgtc
aactacacccccaaccttaccaaggacgcgtccatctccaccatctccaatacgacgtcg
gtgcagctgcggggctcagagagcaaactggtggaccccaaaaagacatacaacagcgtc
agcaagatcgacaagatgtcgcgaatagtgttccccgtcctcttcggaaccttcaacctc
gtctactgggccacatacctgaacagagaaccgatggtgaaaggagttgtcgcttccaca
taa
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