Xiphophorus maculatus (southern platyfish): 102227767
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Entry
102227767 CDS
T02923
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102227767 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102227767 (nup54)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
102227767 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
102227767
NCBI-ProteinID:
XP_014324133
Ensembl:
ENSXMAG00000004684
UniProt:
A0A3B5RBV2
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Position
8:complement(18083747..18091240)
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AA seq
621 aa
AA seq
DB search
MAFSFGGAATNTGAGTSGFSFGQFGAKTTASTTFGFNPTATTTTASSGFGTLTAPAFGAA
TTTTAPATGFSFGASNTGFGGLGAGNTTAGGFSFGGFGLNANPAAISFSAGCFGTATTAG
SVFNFGNSLASTGAFGGFGTTTTTAAAPGSTFNFAPSNTTGSLFGNTQNKGFGFPSGLGT
GATAGATGFGTGLGTTGLGFGGFNIQPTQQQQGGLFGQPAQQQGQAQPTQLYQQVTALSA
PTLLGDERDSILAKWNQLQAYWGTGKGYYVNNNLPVDFTQENPFCRFKAVGYSCVPVSKD
EDGLVVLVLNKKEPDVRAQQQQLVESLHKVLGSNQTLTVNVEGVKALPNDQTEVIIYVVE
RSPNGTSKRIPASTLFTFLEQANIKAQLTQIGVVMSVTRTELSPAQLKQLLQNAPAGVDP
IIWEQAKVDNPDPEKLIPVPMVGFKELLRRLQIQEQMTKQHQTRVDIISNDISELQKNQA
TTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVDEEHLRVQLDTIQSELNAPTQ
FKGRLNELMSQIRMQNHFGAVRSEERYNVDADLLREIKQHLKQQQEGLSHLISVIKDDLE
DIKLIEHGLSDGGHMRGGILS
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagttttggcggtgccgcgactaacacaggggcagggacgtccgggttttca
tttggtcagtttggtgccaaaaccacagcttcaacaacgtttggttttaacccgacagcg
accactaccaccgcttcttcggggtttggcactctgacggctcctgcttttggcgcagcc
acgaccacaactgcaccagccacaggatttagttttggtgcctccaacacaggatttggg
gggcttggagctggaaacaccacagctggtgggtttagctttggggggtttggtttaaat
gcaaacccagcagcaatcagcttcagtgcaggttgcttcggtacagcaaccacagctggc
tctgttttcaattttggtaatagcctggctagcacaggtgcgtttggtggctttgggaca
actacaacaactgctgccgcaccaggatccactttcaactttgccccctccaacacaaca
ggaagcttgtttggtaatacacagaacaaagggtttggattcccatctggactcggaact
ggtgccactgctggagcgacaggctttggaactggattaggaacaactggcctcggtttt
ggaggttttaacatccagccgacacaacagcaacaaggaggcttgtttggccagccggcc
cagcagcagggtcaagctcagccaacccagctttaccagcaagtgaccgctctgtcagcc
cccactcttctgggagacgaacgcgactccatacttgccaagtggaaccagttgcaggct
tactggggaacagggaagggctactatgttaacaacaacctaccggtggactttactcag
gagaaccctttctgcaggttcaaggcagtggggtatagctgtgtcccagtaagcaaggac
gaagatggtttagtggtgttggttctgaataaaaaggagcctgatgttcgtgctcagcag
cagcagctggttgagtcactgcacaaggttctgggaagcaaccagactctgaccgtcaat
gtagagggcgttaaagctctgcccaacgatcagacagaggtgatcatttatgtggtggag
cgttcccccaatggcacctccaagaggatcccagcttccacgctcttcaccttcctggag
caggccaacatcaaggctcagctcacccagattggagtggtcatgtcagtaacacgcaca
gagctgtccccagcacagctgaaacagctgctgcagaacgctcctgcaggtgtggatccc
atcatttgggaacaagctaaggtggacaaccctgacccagagaagttaatccccgtaccc
atggtgggtttcaaggagctgctccgcagattgcagatccaggagcagatgaccaagcaa
caccagaccagagtggatataatctccaatgacatcagtgagctgcagaagaaccaggca
acaactgtagccaagatcgctcaatacaagaggaagctgatggatctgtctcacagggtg
ctgcaggtactaataaagcaggagattcagagaaaaagcggctacgctatccaagtggat
gaggagcatctgagggtacagctggacaccattcagtcagaactcaatgcacccacacag
ttcaagggtcgattgaatgagctgatgtctcaaattcgaatgcagaaccactttggagcc
gtgagatcagaagagcgctacaacgtcgatgcagatctcctccgagaaatcaaacaacac
ttaaagcagcaacaagaaggcttaagtcacctgatcagcgtcattaaagatgacttggag
gacatcaaactcatagaacatggactaagcgacggcggccacatgagagggggcatcctg
agctga
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