Xiphophorus maculatus (southern platyfish): 102227891
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Entry
102227891 CDS
T02923
Symbol
atg4b
Name
(RefSeq) cysteine protease ATG4B
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04136
Autophagy - other
xma04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102227891 (atg4b)
04136 Autophagy - other
102227891 (atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xma01002
]
102227891 (atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xma04131
]
102227891 (atg4b)
03029 Mitochondrial biogenesis [BR:
xma03029
]
102227891 (atg4b)
Peptidases and inhibitors [BR:
xma01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
102227891 (atg4b)
Membrane trafficking [BR:
xma04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
102227891 (atg4b)
Mitochondrial biogenesis [BR:
xma03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
102227891 (atg4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
102227891
NCBI-ProteinID:
XP_005811409
Ensembl:
ENSXMAG00000003762
LinkDB
All DBs
Position
9:complement(26069999..26080345)
Genome browser
AA seq
391 aa
AA seq
DB search
MDAATLTYDTLRFGEFEDFPETSEPVWILGKEYNALTEKDEILSDVTSRLWFTYRKNFPP
IGGTGPTSDTGWGCMLRCGQMILGEALMCRHLGRDWRWAREQKQREEYISILNAFIDKKD
SYYSIHQIAQMGVGEGKPIGQWYGPNTVAQVLKKLAVFDTWSRLVVHVAMDNTVIIEEIK
RLCMPWLDLAGEAAGEGEVNGCLEGACALAEEETALWRPLVLLIPLRLGLSDINEAYIET
LKQCFMLPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPCEDGQVPDDTYHCQ
HPPCRMHICELDPSIAAGFFCKTEDDFDDWCMRIRRLSCKKGGLPMFELVDSQPVHMVSV
DTFNLTPDFSDSDRLERFFDSEDEEFEILSL
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagctacattgacatacgacacacttcgctttggagagtttgaagattttccc
gagacctcggagcccgtgtggatcttggggaaagaatacaatgcgcttacagagaaagac
gagattctgtccgacgtcacgtcacggctgtggttcacgtacagaaaaaacttcccgccc
atcggaggcactgggccgacatcggacacgggatggggatgcatgttgcggtgcggccag
atgattctcggagaggccttgatgtgcagacacttaggcagagactggagatgggccaga
gagcagaaacaaagagaagagtacatcagtattctcaacgccttcatcgacaaaaaagac
agctattattccatccatcaaatcgcccagatgggcgtcggagaggggaagcccattgga
cagtggtatgggcctaacacggtcgcccaagttctgaagaagctggctgtgtttgatacg
tggagcagattagttgtacacgtggcgatggacaacactgtgatcatcgaggagatcaag
cgtctttgcatgccgtggctggacctagcaggtgaagcggcaggagagggggaggtgaac
ggctgtctggagggagcgtgcgccctggctgaggaggagacggccctgtggaggccgctg
gtcctgctcattcctctcaggctgggcctgagtgacatcaatgaggcctacatcgaaacg
ctcaagcaatgcttcatgctgcctcagtcgctgggtgttattggggggaaacccaacagt
gcccattacttcattggttatgtcggggaggagctcatctatttagacccacacaccacg
cagcccgccgtggagccgtgcgaagacggccaggtccctgatgacacgtaccactgtcag
cacccgccctgccgcatgcacatctgtgagctggacccatccatcgcggcgggtttcttc
tgcaaaacggaggacgatttcgacgactggtgtatgcgcatacgcaggttgtcctgcaag
aaaggaggcctacccatgtttgaattagtagacagccagcccgtccacatggtcagcgtc
gacacctttaaccttactcctgatttctcggactcggacaggctggagcggttctttgat
tcggaggacgaggagtttgaaatcttgtctctgtaa
DBGET
integrated database retrieval system
