Xiphophorus maculatus (southern platyfish): 102228137
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Entry
102228137 CDS
T02923
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xma03016
]
102228137 (rtcb)
Enzymes [BR:
xma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
102228137 (rtcb)
Transfer RNA biogenesis [BR:
xma03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
102228137 (rtcb)
Prokaryotic type
tRNA splicing ligases
102228137 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
102228137
NCBI-ProteinID:
XP_005809749
Ensembl:
ENSXMAG00000002855
UniProt:
M3ZKX4
LinkDB
All DBs
Position
17:complement(1878895..1883169)
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AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLEKTGSTSWRIKKGFVPNMQVEGVFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPNAVVSPGGVGFDI
NCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTDQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaaactacaacgatgagctgcagtttctggagaaaacgggcagcacgagctgg
aggatcaaaaagggctttgttcccaacatgcaggttgaaggagtcttctatgtgaatgat
tccctggagaagctgatgtttgaggagctccggaacgcctgcagagggggaggtgtcgga
gggtttctgccggccatgaagcaaatcgggaacgttgcagctctgcctggaattgttcat
aggtccatcggactcccagatgtccactctggatacggatttgccatcggcaacatggct
gccttcgacatgaacgatccaaacgcagtagtgtctccaggtggcgttggctttgacatt
aactgtggcgtccgtctcctgaggaccaacctggacgagcgggacgtccagccggtgaag
gagcaactggcccagtccctgttcgaccacatcccggtcggagtcggctccaaaggagtc
atcccaatgggagccaaggatctggaggaggctctggagatgggggtggactggtccctg
agggagggctacgcctgggccgaggacaaggagcactgcgaggagtatggccggatgcta
caggctgatcctaacaaggtgtcgtccaaggccaagaagagaggcctgccacagctggga
acgcttggggccggaaaccactatgctgagatccaggtggttgacgagatctacaacgag
tacgccgccaagaagatgggcatcgaccacaagggccaggtgtgcgtgatgatccacagc
ggcagccgcggcctcggacaccaggtcgccacagatgctctggttgccatggagaaggcc
atgaagcgggataagatcacagtgaacgaccggcagctggcctgcgctcgcatcacctcc
caggagggccaggactacctgaagggaatggctgctgcagggaactacgcctgggtcaac
cgctcctccatgaccttcctcaccagacaggccttctccaaagtgttcggcaccacgcca
gacgacctggacatgcacgtcatctacgacgtctcccacaacatcgccaaggtggaagag
cacatggtggacgggaagcagaggacgctgctggttcaccggaaaggatccacccgtgcc
ttccctcctcaccatcctctgatcccggtggactaccagctcacaggtcagccggtgctc
atcggagggacgatgggaacctgcagctacgtcctgacaggaaccgatcaaggaatgacg
gaaacgttcggcaccacgtgtcacggagcgggccgcgccctctctcgagcaaagtcccgc
aggaatctggacttccaggacgtcctggacaaactggctgatatgggcatcgccatccga
gtggcgtctcccaaactggtgatggaggaggctccagagtcgtacaagaacgtgacggac
gtggtgaacacgtgtcatgacgcaggaatcagcaagaaggccatcaaactgaggcccatc
gctgtgatcaaaggctga
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