Xiphophorus maculatus (southern platyfish): 102228310
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Entry
102228310 CDS
T02923
Symbol
sox1
Name
(RefSeq) transcription factor SOX-1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xma03000
]
102228310 (sox1)
Transcription factors [BR:
xma03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
102228310 (sox1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
SelP_N
Motif
Other DBs
NCBI-GeneID:
102228310
NCBI-ProteinID:
XP_005808023
Ensembl:
ENSXMAG00000019447
UniProt:
M4AYE9
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All DBs
Position
24:5978114..5981400
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AA seq
355 aa
AA seq
DB search
MYSIMMETDLHSPVVPQTNPSNPGGHAGGGGGGPAGKVPQERIKRPMNAFMVWSRGQRRK
MAQENPKMHNSEISKRLGAEWKVMTEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKT
LLKKDKYSLAGGLLGSSPGVGMGGGQRLESPGAGHVGASAGYASHVNGWANGTYSGQVAA
AAAAAHAMMQEAQLAYTQHPGSGAHPHHHPHHHHHPHHHPHNPQPVHRYDMSALSYSPIS
NSQSYMSASPPGYGGITGYTHQHQSSGVSPVSGAIGGTLGSLVKSEPSVSPPVSTARAPP
PCPTGDLRDMISMYLPTGEAAGGDSVQSRLHVLHPQHYQSGGSAAVNGTVPLTHI
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatcatgatggagacggacttgcattcccccgtggtgccccagaccaaccca
tccaacccggggggacatgcgggaggaggaggcggggggcccgcagggaaggtcccccag
gagaggatcaagagacccatgaacgccttcatggtgtggtcccggggccagcggaggaaa
atggcacaggagaaccccaagatgcacaactcggagatcagcaagcggctgggcgcggag
tggaaggtgatgaccgaggcggagaagagacccttcatcgacgaggccaagcggctccgg
gccatgcacatgaaggaacacccggactacaagtaccgcccgcggaggaagaccaagact
ctactcaagaaggacaagtactcacttgccggcggactcctcggttcatcgccgggtgtg
gggatgggcggcgggcaacgactggagagccccggtgcgggacatgtgggggccagtgcg
ggctacgcctcgcatgtgaacggctgggcgaacgggacgtactcgggtcaggtggcggcc
gcagcggcggcggctcacgccatgatgcaggaggcgcagctggcgtacacccaacaccca
ggcagcggggctcacccgcaccatcacccgcaccaccaccaccacccgcatcaccacccg
cacaacccgcagccggtgcacaggtatgacatgagcgctttgtcttacagcccgatctcg
aactctcagagctacatgagcgcctctccgccgggctacggcggcatcaccggctacacc
caccagcaccagagctccggggtctcccccgtgtccggggccatcggagggactctgggt
tcgctcgtgaaatcggagccgagcgtcagcccgcccgtttccacggcgcgcgcaccgccg
ccgtgccccacgggagacctgcgggacatgatcagcatgtatctgcccactggcgaggcg
gcgggcggcgactccgttcaaagcagactgcatgtgctgcacccgcagcactaccagagc
gggggctccgctgcggtgaacgggacggttccactcacgcacatttga
DBGET
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