Xiphophorus maculatus (southern platyfish): 102228782
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Entry
102228782 CDS
T02923
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102228782 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102228782 (edc4)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102228782 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
102228782 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EDC4L
Beta-prop_EML_2
WD40_Prp19
WDR55
SYCP2_ARLD
Apolipoprotein
Band_7
Motif
Other DBs
NCBI-GeneID:
102228782
NCBI-ProteinID:
XP_014327414
Ensembl:
ENSXMAG00000005735
UniProt:
A0A3B5PUL9
LinkDB
All DBs
Position
2:complement(2499836..2533422)
Genome browser
AA seq
1386 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGSSADMQPSEDQRKLSFNGELNGLLGAGLLGSSLS
ESTRPISTDVSVQESQRICLTGDDGSTCIPIVLNNVEIEASQDSGINSKARGSNKVKIQP
VAKYDWEHKYYYGRLIAVSNSFVAYAIRGANNHAMIRVLSLDFSERSLLKGFTGAVTDLA
FAHLDSSLLGCVDEAGNLMVWHLTLTRSKILDEIVVHIQRPEDAPLNSHRRLIWCPYILE
DSEENQDDTSQTLALLHEDGAEVWDLEVLRANNSSWPVDVSEIKDGLIIVKGHTQRVSEG
ALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHEGRPLSCLLFCDNHKRQDP
EVPFWRFLITGADQNQELKLWCTVSWTCLQTIRFSPDPFNSTVLPSLKASLDLAAEYLIL
TDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVTHSRLRHTEVLPAEEE
SESMSTEGTQGPAESKSGIQIKLYCVHTKSLQDVQIWFQPNAGFNMSGFLPHSDSQDGFA
GFPDHLTDHSSDKDSGSGSQSDLRKIPSLPVPSDFLSNSGPSGGPMPKLMTPDAFMTPST
SVPASPGSSASSLTIVTAISSNSDSTNRAMDDVSQSPIRGENNNGGSSLGLSVATSSPRA
APAVLLPGLENLQTLASPSGPLGLDSPQVPDSPLLPPLASPSRARSPDVISSASTVMSQD
MPEIATQTLQLQRGHGLEALQLPALQTDSMASAACALHLLTSPRAATNNGLLPLELGGAE
GSPMADDSESRLGNKPSLLENTLSQENAGVSGGSLDGSVSHTSWPAAPDITRETRNSLRD
NGLAECLREESSERRLSSPYHRRSYHLPQNDSQDVGADQSDPDDEIASLASSSGNCGSRS
SHRMPVKDWKSSPRASPKLKRKLKKDDSESSQPRHMDPGQFNTETQDELLMLLRSQQREL
TDLCSLVETMPGTIMAQVEHVLMKHQEQEQRRLDRALAENQSRQQQLHEQLSQQLSHALS
TALTNRMDKVLREELKKAVPQTISKSLEPVTGQLNNSIAAKMAAVEVTIKDIVIKVVKSK
NTTDAMGRAAAEAMQGPIQAAYKDVFQSTVLPVFERGCQSMFQQINDSFKQGTQDYIQQL
EAHLKSRKQREQEARDPVIGQLQQTIDGFQSCTDQLASSVSTAVRAEVQHQMQVVVGNLQ
ESILSHLQRIVKGEVSLAMREQQAVVTSSIMQAMRSAAGTPVPTAHLDYQSQQANILQLL
QQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQTPCPLSQPVLLSLIQQLSSNLATR
SQLKISYLEDAVMNLDHSEPLTRDHMSSVLAQVRSKLLAFLQQDPHSPLSKRARGLLLML
NGVVNH
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctaattctaacatagacatcgagggagcgacccagcacctccgggacatcctg
aagctcgaccgtccggggagcagcgccgatatgcaaccaagcgaagatcagagaaaactg
tccttcaacggagagctgaacggtttactgggagcaggactactggggagcagcctatct
gaatccaccagacccatttccacggacgtcagcgtccaggagagccaaaggatctgcctg
actggtgatgatgggagcacctgcatccccatcgtcttaaacaatgtggagatagaggcg
agccaggactcaggcatcaacagcaaggcgcggggcagcaacaaggttaaaattcaacct
gtcgccaagtatgactgggagcataagtattattatggccgactgatagccgtgtccaac
tccttcgtcgcctacgccatcagaggagccaacaaccatgctatgattcgcgtgctgagt
ttggacttcagcgagcgctccttgctgaagggcttcaccggcgccgtcactgatctcgct
ttcgcccacctcgactcctctctgttgggctgtgtggatgaggcgggaaacctgatggtc
tggcatctcacgctcacgagaagcaaaatactggatgagatagtggttcacattcagcgt
ccagaagacgctccactgaactcccacagacgcctcatttggtgcccgtacatcctggaa
gacagcgaggagaaccaggatgacaccagccagacactggctctcctgcatgaggacggg
gctgaggtttgggaccttgaagttttgagagccaataacagcagttggccagttgatgtc
tcagaaatcaaagatggcctcattatagtcaaaggacacacacagagagttagtgaaggt
gctctgtctcctgatgggaccgttttggccacagcgagccacgacggttacatcaagttc
tggcagatctacatagaaggaggacaagataagcccagatgtctccatgaactccgacct
cacgaaggacgtccgctctcctgtcttctcttctgtgacaaccacaaacggcaggatcca
gaggttccgttctggaggtttctgataactggagcagaccagaaccaggagttgaagctt
tggtgtacagtttcctggacctgcttgcagaccatcaggttttctccagatccattcaac
tctacggttcttcccagtctcaaggccagtttagatcttgctgctgaatacttgatcctc
actgatgtgcaaagaaaggtcctctatgtgatggagctgcggcaggacctggagaagggc
aaagcgagcttcacggccgtgtcggagttcctgctcacccaccctgtgctcagcttcggg
gtgcgtgacgtgacccacagccgcctgaggcacaccgaggttctgccggcggaggaggag
agcgagagcatgtcgacagagggcactcaaggacctgcagagtccaaatctgggatccaa
attaaactctactgtgttcacacaaagagtttgcaggacgtacagatctggtttcagccc
aacgccgggttcaatatgtcaggttttcttccccactctgactcccaagatggttttgct
gggtttccagaccatctcaccgatcacagctccgacaaagattctggaagcggctcgcag
tccgaccttaggaagatcccctcacttcctgttccctctgacttcctgtctaactctgga
ccatccggcgggccgatgcccaagctgatgactcctgacgccttcatgacaccaagcact
tcggttcctgcgtctcctggcagcagcgccagcagtctgactattgttacagccatcagc
agcaactctgactcgacaaatagagccatggatgatgtcagtcagagtcccatcagagga
gaaaacaacaatggcggcagcagtttgggactctctgtcgccaccagcagtccaagggct
gcacctgcagttctgctgcctggactggagaatctgcagactctggcttcccccagcggc
cctctgggcctcgactcgcctcaggtcccagattctcctctgctgccgccactggcctcg
ccgagccgggcccgctcgccagacgtcatctcctccgcctccaccgtgatgtcgcaggac
atgccggagatcgcgacgcaaacgctgcagctgcagcgcggccacggcctggaagccctg
cagcttcctgcgctgcagacagacagcatggcctctgctgcgtgtgctctgcacctcctg
acgtcgccgcgcgccgccaccaacaacggtttgttgccccttgaactcggaggtgctgaa
ggatcgccgatggcagacgactcggagtccagactcggtaacaagccatctcttctggag
aatacgttgtcgcaggaaaacgctggggtcagcggagggtcgttggatggcagcgttagc
cacacgtcatggccagcggctccagacatcaccagggaaaccaggaacagcctcagggac
aacgggctggcagaatgtttgagagaggagtcgagtgagcgccgcttgagctctccctac
caccggcgctcctaccacctcccccagaacgacagccaggatgtcggcgctgaccagagc
gatcctgatgacgagatcgccagcctggcttcgtcctctgggaactgcggctctcgctcc
tctcacaggatgccggtgaaagactggaagagctcgccacgagcctcgccgaaactcaag
aggaaactcaagaaagatgacagtgaatcttctcagcccaggcacatggatcccggtcag
tttaacacagagactcaggatgagctcctgatgcttctgcgcagccagcagagggagcta
acggatctgtgttctctggtggagaccatgccgggaaccatcatggcgcaggtggagcac
gttctgatgaaacaccaggagcaggaacagcgcagactggaccgagctctggccgagaat
cagagccgtcagcaacagcttcacgagcagctgagccagcagctgagccacgccctcagc
acggcgctgaccaacaggatggacaaagtcctgagagaggagctaaagaaagcagttcca
caaaccatttctaagagtctggagccggtgacggggcagctgaacaactcgatcgccgct
aagatggccgccgtggaggtcacgattaaggacatcgtcatcaaagtggtcaaatccaag
aacactacagacgccatgggccgggccgctgcggaggccatgcagggccccatccaggcc
gcctacaaagatgtcttccagagcacagtgctgcccgtgtttgaaagaggatgccagtcc
atgttccagcagatcaacgacagcttcaagcagggcacgcaggactacatccagcagctg
gaggcccacctgaagagccggaagcagagggagcaggaggcgcgggaccccgtgatcggc
cagctgcagcagacgatcgacggcttccagagctgcaccgatcagctggccagcagcgtc
tctaccgccgtacgagccgaggtccagcaccagatgcaggtggtggtggggaatctgcag
gagtccatcctgagccacttgcagcgcatcgtgaaaggcgaggtgagcctggcgatgagg
gagcagcaggccgtcgtcacctccagcatcatgcaagccatgcgctctgccgccgggaca
cccgtccccaccgcacacctcgactaccagtcgcagcaggctaacatcctgcagctgctc
cagcagggccagctcaaccaggccttccagcaggctctgtctgcgacggacctgaacctg
gttctgtacgtgtgtgagaccatcgactcccagcaggtgttcggccagacgccatgcccc
ctgagccagccggtgctgctgtcgctgatccagcagctgtcctccaacctcgccacgcgc
tcccagctcaagatcagctacctggaggacgcagtgatgaatctggaccacagcgagccg
ctgaccagagatcacatgtcgtcggttctggcccaggtccgatctaaactgctggccttc
ctgcagcaggaccctcacagcccgctcagcaagcgggcgcgcggcctgctcctgatgctg
aatggagtcgtcaaccactag
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integrated database retrieval system
