Xiphophorus maculatus (southern platyfish): 102228838
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Entry
102228838 CDS
T02923
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102228838 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xma03021
]
102228838 (smarcd1)
03036 Chromosome and associated proteins [BR:
xma03036
]
102228838 (smarcd1)
Transcription machinery [BR:
xma03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102228838 (smarcd1)
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102228838 (smarcd1)
PBAF complex
102228838 (smarcd1)
GBAF(ncBAF) complex
102228838 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
102228838
NCBI-ProteinID:
XP_005807609
Ensembl:
ENSXMAG00000010389
UniProt:
M4A7I4
LinkDB
All DBs
Position
20:6881735..6897587
Genome browser
AA seq
515 aa
AA seq
DB search
MAARGGFQSTPTAGGGGAMGPGPPVPGAAPGMGPGTPSGRMGPTSGAQNHMYRSPMPGPG
YPRPGMPPSSRMTPQGPAMGPPGYGSSPVSRPGMPGVMDPSRKRPAPQQIQQVQQQQNRN
QHTKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
KLRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSL
VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPR
LARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQR
LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGL
DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDFKTITDVVGNPEEERRAE
FYYQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagagggggatttcagtcaacaccgactgctggtggcggtggagcaatggga
cctgggccaccggtaccaggcgcagcgccaggtatgggacctgggactccctctggaaga
atgggaccgacgtcaggcgcacagaaccacatgtaccgctctccgatgcccgggcctggg
tacccgagaccgggcatgcccccatccagccgtatgaccccgcaaggccccgccatgggc
ccaccgggttacggcagcagccccgtgtctcgccctgggatgcccggcgtgatggacccg
tcccgaaaaagacccgctcctcagcagatccagcaggttcagcaacagcagaaccgcaac
cagcacacaaagaagaagaaaatggctgataaaattctacctcagaggatcagagagctg
gtcccagagtctcaggcttacatggatcttctggcttttgagaggaagctggatcagacc
atcatgcgcaaacggctcgacattcaggaggccctaaaaaggcctataaagcaaaagaga
aagctccggatctttatatccaacaccttcaatcctgcaaagcctgatgctgaggatgga
gaaggcacagttgcatcatgggagctgcgtgttgaagggcgactattagaagatactgct
gtgtccaagtatgaagctaccaaacaaaaaagaaagttctcctccttctttaagtcactt
gtgatcgaattggataaagacctgtatggaccagataatcaccttgtggaatggcacagg
acggccactacccaggagacggatggtttccaggtgaagaggcccggtgatgtgggagtt
cgctgcaccgtcctgctcatgctggattaccagcctccccagttcaagctggacccccga
ctggcccgtatgttgggtatccacactcagaccagacctgtcatcatccaggctttgtgg
cagtacgtcaaaacacacaaactccaagatccgcatgagcgcgagttcatcaactgtgac
aaatacctccagcaaatttttgaaactcagcgaatgaagttttccgaaatcccacagcgc
ctgcatgctctgctgatgcctccagaaccaatcatcatcaaccatgtgatcagtgtggat
cccaatgatcaaaagaagactgcttgctatgacattgatgtggaggtggatgacacgctg
aagacacagatgaactcattcctgctctccacagcaagtcagcaggaaatagcaggattg
gataacaagatccatgaaactattgagaccatcaaccagctgaaaacccagagggagttc
atgttgagttttgccagggatcctcagggctttatcaacgactggcttcagtcccagtgc
agggacttcaagaccattacagatgttgtgggaaacccagaagaggagcggagagcagag
ttttactatcagccgtgggctcaggaggccgtgtgtcgctacttctactccaaagtccag
cagaggcggcaggagctggaacaggcgcttggaatcaggaacacttga
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