Xiphophorus maculatus (southern platyfish): 102228935
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Entry
102228935 CDS
T02923
Symbol
hnf1a
Name
(RefSeq) hepatocyte nuclear factor 1-alpha isoform X2
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xma03000
]
102228935 (hnf1a)
Transcription factors [BR:
xma03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
102228935 (hnf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
HNF-1A_C
Homeodomain
Telethonin
HTH_37
APP1_cat
Homeobox_KN
HTH_5
Motif
Other DBs
NCBI-GeneID:
102228935
NCBI-ProteinID:
XP_005815814
Ensembl:
ENSXMAG00000003472
LinkDB
All DBs
Position
12:27142398..27154367
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AA seq
558 aa
AA seq
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MEGEERAAMARPSRLTALQEQLIWALLESGLSRDVLVQAVGELERSRAGAERGDKGDGES
SEEGEMDFPPPIFRELEKLPPEDASKLRAEVDRLLQEDPWQVAKMVKSYMQQHNLPQREV
VESTGLNQSHLSQHLNKGTPMKNQKRAALYSWYVKKQCEISQQFTNAKHGLAPVEEQGED
TKKGRRNRFKWGPASLQILFNAYERQKNPSKEEREGLVEECNRAECLQRGVSPSQLAGLG
SNLVTEVRVYNWFANRRKEEAFRHKLALDTSFNSQSASSSNATLPTSPEHGVKYSQQISC
DTGSTARSSIGDRVGRLVVSPMQLEPSHTLLESHNPKLVSGSGPLPPVSTLTSLHSLSAS
PASSQSLIMASVPSVMSLGESSLLIGLAPTQSQTVPVINNMGAGFTTLQPISFQQQLHTP
HQQAIQQQLQGHMAASPFMATMTQLPCHMYNKSESPQYHSSSLLSQAMVITDSSSLGTLT
SLAAVRQILTADPEEETESPLQEDSLHLQPHTPVPASSESLELYPSSQTTERHQSHLLSP
SPTDIGSYMPTQMVSTAQ
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaggagagggcagccatggcgaggccaagtcgtctgaccgcccttcaggag
cagctcatctgggccctgctggaatccggactgtcccgggatgtcctagtccaagccgtg
ggcgagctggagcgcagcagggccggagcagagaggggagacaagggcgatggagagagc
tccgaggagggagaaatggatttccctccgcctatattccgagagctggagaagcttcct
ccggaagacgcgtccaagctgagggccgaggtcgaccggctgctgcaggaggacccctgg
caggttgcaaaaatggtgaaaagctacatgcagcagcacaacctacctcagagagaggtg
gtagagtccacaggcctcaaccagtcccatctctcccagcacctcaacaaaggcacaccc
atgaagaaccaaaagagagccgctctctacagctggtatgtcaagaagcagtgcgagatc
agtcagcaatttaccaatgccaaacatggccttgcaccggtggaggaacaaggagaagac
accaaaaaaggacggaggaacaggttcaagtggggcccagcatccctacagattctcttc
aatgcctatgaacgtcagaagaaccccagcaaggaggaaagagagggattggtagaggaa
tgcaacagagccgagtgcctccagagaggggtgtccccttcccagcttgctggtctgggt
tcaaacctagttactgaagtcagggtgtacaactggtttgccaaccggcgaaaagaggag
gcttttcgtcacaagttggcccttgacacatctttcaacagccagtcagcttcctcctct
aatgccacccttccaacaagtcctgagcatggtgtgaagtacagccagcaaatctcctgt
gacacagggagcacagcaagaagcagcataggggaccgtgtgggacgtctcgtggtcagc
cctatgcaactagaacccagccatacactccttgagtctcataaccccaagctggtgtct
ggcagtggaccactgcccccagtaagcacgctgacatccctgcacagtctttcagcgtct
ccagcctcctcacagagcctcatcatggcctcggtgcccagcgtcatgagtttgggcgag
tcctcgcttctaataggtttggcccctacgcaatcacagaccgtccccgtcattaacaac
atgggggctggtttcaccactctccagccaatttcattccagcagcagcttcacacaccc
caccagcaggcaatacaacagcagcttcagggtcacatggctgccagtccgttcatggca
accatgacacagctgccatgtcacatgtacaacaagtcagagtcgcctcagtaccattcg
tccagtttgctgtctcaagccatggtcatcactgacagcagcagtctggggaccctgacc
agcctcgctgcggtccgacagatcctcacagcagatcctgaggaagagacggagtcccct
ttgcaggaagattctttacacctgcagccacacacacctgtcccagcgtcttctgagagc
ctggagctgtatccttcctcccagacgacagaacgccatcagtctcacctcctctcccct
tcacccacagacatcggctcctatatgcctacacaaatggtgtccacagcccagtaa
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