Xiphophorus maculatus (southern platyfish): 102229311
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Entry
102229311 CDS
T02923
Symbol
lamb1
Name
(RefSeq) laminin subunit beta-1
KO
K05636
laminin, beta 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102229311 (lamb1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102229311 (lamb1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
102229311
NCBI-ProteinID:
XP_005796438
Ensembl:
ENSXMAG00000016166
UniProt:
M4AP48
LinkDB
All DBs
Position
2:complement(19976420..20000586)
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AA seq
1797 aa
AA seq
DB search
MLQLRLAVLLALQALTCTQEGGGSPGGTPVDLSLPEFGDVCTEGSCYPATGDLLIGRAHQ
LLSTSTCGLKRPEPFCIVSHLQEEKKCFVCDSAAPYDDELANHNHSHRIENVVTTFGPNR
LKTWWQSENGLENVTVQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADYGKTWQVYRYFA
YDCESSFPSVSHGPMKKVDDVICDSRYSDIEPSTEGEVIYRVLDPAFRIEDPYSPRIQNL
LKITNLRVKFTKLHTLGDNLLDSRMEIKEKYYYAIYDMVVRGNCFCYGHASECAPVEGAG
QTMEGMVHGHCMCNHNTKGLNCEQCEGFYHDLPWRPAEGRNTNACKQCNCNQHSDSCHFD
MAVFMASGNVSGGVCDDCRHNTTGHNCEQCRPFYYQHPEKDLRDPNICQPCNCDPVGSLN
GGICDGLTDVRVGLIAGQCRCKVNVEGERCEHCKPAYYGLSDEPEGCKACTCSPLGTSPG
GNPCDSETGSCFCKRLVIGRDCDQCVDEHWGLSNDMDGCRPCDCDLGGAVHNRCDQVSGQ
CVCRDHMFGRRCDQVESGFYFVALDHYTYEAEDAKFGPGVTMVPRPHPHDRSPTWTGVGL
VNVPEGAFLDFSVDNIPHSMEYDILIRYEPQLPDQWEEVLMIVMRPGPITADSRCVNTVP
DDDNQMISLHPSSRYVVLPRAVCFESGLNYTIRLSLPLYSALSEVHSPYTLIDSIVLMPH
CKSLEIFTPSVGGDSSAWETFQRYRCLENSQSVIKTPMTDICRNFIFSISALLQQGAKEC
QCDPQGSLSTVCDPSGGQCQCRPNVAGRNCDRCAPATFQFGPSGCKECACDPQGSQSPIC
DQLSGQCVCVAGAYGRQCDRCLPGHWGFPACRPCSCNGHTESCDAATGRCTACRDHTTGH
SCDRCLDGYYGDPVLGSGDHCRPCLCPDGPNSLRQFAGSCYRSDTSEQVVCVCNPGFKGA
RCDQCSPGYYGNPEQAGGQCLPCQCNNNIDMLDPESCDARSGECLRCLYHSEGPSCQNCK
LGYYGNALVQDCRKCVCNQLGSDESSCQSSTDCHCDRSSGQCHCRPNAIGQHCDRCAPDT
WNMASGAGCQSCDCNPEHSYGTTCNEISGQCSCHPGFGGKTCNECRELFWGDPEVQCHAC
DCDPRGTLEPQCNKVSGHCICVEGVAGPRCDACARGFHGTFPDCHRCHQCFSEWDNVIGQ
LTNQTHRLVNKVSSIKASGISGPYRKSIESMERSASDIQSILDQDPASQPLTEVQNLLQQ
ASDLMAALSQTMNNTEETLDLVAEQDSGIKTQLDSVTSDAQKLERTVQELLDQVEFIKNS
NIRGATDSVTKYFLQSQAAEARANASTINAGNPVESSAALRQLTEDKMNQTREEFLERQS
EHAQKLDNLAGEMETLDLSVISYKTCGSPSSGQDSCWSSPCGGLGCVDPEGQPKCGGEGC
DGAVTAANSILLKTQEAEQEIISAMAEVEKLSKMVLEVKMQADEAKLSAQNVLMKTNRTK
HKVDQSNEELRSLIRQIKDFLTQDAADLESIELVANEVLAMQMPTTPAQLQNLTDEIRHK
VGELGHVEAILQQSADDIQRAETLLDQARQASKQATDTKDSAEKVKQALEEAQRAHTAAS
SAIQQATSDIQTTAKLLSSVETETADAESKLDNATQRLQRLEQDVKLLADRSANVTQRTK
LADQEAADIGRIAEEVKKEFESEVKQKYSTVEQLIDQKAGGVADAKKRAESLQNQAKQLL
LQASDKLQLLKDLEKSYDDNQRTLELKAEQLVEMEAAVKKLLQEISHKVTLYSTCFF
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atgttgcagctgcggctcgcggtgctgctcgctctgcaggcactcacctgcactcaggag
ggcggaggctcaccgggtgggaccccagttgacctcagcctcccagagtttggcgacgtt
tgcactgaaggcagctgttacccagcgacaggcgatcttctgattggccgagctcaccag
ctgctgtccacctctacctgtggactgaagcgtccagaaccgttctgcattgtcagccac
ttgcaggaggagaagaagtgctttgtgtgtgactcagcagcaccatatgacgatgagctg
gccaatcacaaccacagccaccgaattgaaaacgtcgtcaccacatttggtcccaacagg
ctgaagacctggtggcagtctgagaatggtctggagaatgtcaccgtccagctgaacctt
gaagccgagtttcacttcactcatctcattatgaccttcaagacgtttcgaccagctgcc
atggtcattgagcgatcagcagactatggaaaaacctggcaggtttaccgctactttgcc
tacgattgcgagtcgtcctttccatcagtttcccatggtccgatgaagaaggttgatgat
gtcatctgtgactcacgttactcggacatcgagccatccactgaaggcgaggtgatttac
agagtcctggacccagcatttcgtattgaagacccttacagtccacggatccagaacttg
ttgaagatcaccaacctgcgggttaagttcaccaagctgcacacactcggagacaacctg
ctggactctcggatggagatcaaggagaagtattactatgccatctatgacatggtggtc
agaggaaactgcttctgttatggacatgcgtctgaatgcgcccctgttgaaggagcaggc
cagaccatggagggcatggttcatggtcactgtatgtgcaaccacaacactaaaggactg
aactgtgaacagtgcgaaggcttttaccacgatctgccctggagaccagccgaggggcgc
aacaccaatgcctgcaaacagtgtaactgtaaccagcactcggactcatgccacttcgac
atggccgtgttcatggcttctggaaacgtcagcggaggagtttgcgacgactgtcggcac
aacacgaccggacacaactgtgagcagtgcagaccgttttattaccaacatccggagaag
gacctcagagacccaaacatctgccagccctgtaactgcgaccccgtgggctccctgaat
ggaggaatatgcgacggattgacggatgtccgagtcggtctgatcgctggtcagtgccgg
tgtaaagtcaatgtggagggggaacggtgcgaacactgcaaaccggcgtactacgggctc
agcgatgaacctgaaggctgcaaagcatgtacctgcagtcccctgggaacatctcctgga
ggaaacccgtgtgacagcgaaacaggaagctgtttctgcaagcgtctggtgatcgggcgg
gactgcgaccagtgtgtggatgaacactggggactcagtaacgacatggacggctgcaga
ccgtgcgactgcgatctgggaggagccgtccacaaccggtgtgatcaggtgagcggtcag
tgtgtctgcagggatcacatgttcggccgtcgctgcgatcaggtggagtccgggttctac
tttgttgctctggatcactacacctacgaggctgaagatgccaagtttggacctggagtg
acgatggtgcccagaccccaccctcatgaccgcagtcccacctggacaggcgttggcctg
gtcaatgttcctgaaggggccttcctggatttctctgtggacaacatccctcattccatg
gagtacgacattcttatccgctacgagcctcagctgcctgaccaatgggaggaggttctg
atgatagtaatgaggcctggaccaattacagctgacagccgctgcgtcaacacggtgcca
gacgacgacaaccaaatgatctcccttcatcccagctcgcggtacgtggttctgccgagg
gcggtttgttttgaatctgggctgaactacacgatccgcctcagtctcccgctctactcg
gccctcagtgaagtccattctccgtacacgctgatcgactcgatcgtgttgatgccgcac
tgtaagagcctggaaatattcaccccctctgtgggaggggactcgagtgcttgggaaacg
tttcagcgttatcgatgtttggagaacagccagagtgtcattaaaaccccgatgactgac
atctgcaggaacttcatcttcagcatctctgccctgttgcagcagggagctaaagagtgc
cagtgtgacccccagggctctctcagcacagtgtgtgaccccagcgggggccagtgtcag
tgtcgacccaacgtggcgggcaggaactgtgacagatgcgctccggctacgtttcagttt
ggaccgagtggctgcaaagagtgtgcatgcgaccctcaggggtcccagagtccaatctgc
gatcagctgagtggtcagtgtgtctgtgtcgccggcgcctacggtcggcagtgcgaccgc
tgcctgccgggtcactggggcttcccggcctgccgcccctgctcctgtaacggacacacg
gagagctgcgacgccgccaccggccgctgcaccgcctgcagggatcacaccaccggacac
agctgcgacaggtgtctggatggttactatggcgacccggttctgggctcaggtgaccac
tgtcgcccatgcttgtgtcccgacggcccgaacagtttgcggcagtttgcgggaagttgt
taccgcagcgacacctcggagcaggttgtgtgtgtttgcaacccaggattcaaaggtgct
cgctgtgatcagtgttcacctggttactatggaaaccctgaacaggccggtggccagtgt
ctcccgtgccagtgcaacaacaacatcgacatgctggacccggagtcctgtgacgccaga
tccggcgagtgcctgcgctgtctgtaccacagtgagggtccgtcctgccagaactgcaaa
ctgggttactacggcaacgccctggttcaggactgcaggaagtgtgtctgtaatcagctg
ggcagcgacgagtccagctgccagtcctccaccgactgccactgcgaccgcagcagcggc
cagtgccattgcagacccaatgcgattggtcaacattgtgaccgctgtgcgcccgacacc
tggaacatggccagcggcgccggctgtcagagctgcgactgcaaccctgagcattcgtac
gggacgacctgtaacgagatcagcggtcagtgctcctgccatcctggctttggaggaaaa
acttgtaacgagtgccgagagctgttctggggagaccctgaagtccagtgtcatgcatgc
gactgcgaccctcgcggcaccttggagccgcagtgcaacaaagtgagcggtcactgcatc
tgcgtggagggcgtggccgggcctcgctgcgacgcctgcgcccgcggcttccacgggacc
ttcccagactgccatcggtgccaccagtgtttctcagagtgggacaacgtcattggtcag
ctgaccaatcagacacaccgattggtcaacaaggtcagctccattaaagccagtggaatc
agcggaccgtacaggaagtccatagagagcatggagagaagtgcctcagacatccagagc
atcttagaccaagatccggcctcgcagcctctgactgaggtccaaaacttgctgcaacag
gccagcgacctgatggcagctttgagccagaccatgaacaacaccgaggaaactttggat
ctggtggctgagcaggactctggcattaaaacccaactggactctgtgacgtcggatgct
cagaaactggagcggacggtccaggagctgctggaccaagtggagttcatcaagaactcc
aacatcagaggggcaacagacagtgtcactaagtacttcctgcagtcccaagcagccgag
gcgcgagcaaatgcctcaaccatcaacgccggcaacccagttgaatcttctgccgcccta
cggcaactcacagaagacaaaatgaaccaaaccagggaggagtttctggagagacagtct
gagcatgctcagaagctggacaacctggctggagagatggagactttggacctatcagtg
atcagctataagacctgtggcagtccatcatccggccaagactcctgctggtcttcgccc
tgcggaggtctgggctgtgtggaccctgaaggtcagcccaagtgtggaggagaaggatgt
gatggtgcagtgacagcagccaacagcatcctgttgaagactcaagaggccgagcaggaa
atcatcagcgccatggcagaggtggagaagctctccaagatggtgttggaggtgaaaatg
caggcagatgaggcgaagctcagcgcccagaatgtcctgatgaagaccaacagaaccaaa
cacaaggttgaccagagcaacgaggagctgcgaagcttgatcagacagatcaaagacttc
ctcacacaggacgctgcagacctggagagcatcgaactggtggcaaacgaagttctggcc
atgcagatgccgaccacaccggctcagctgcagaacctaacggatgagatccgacacaag
gtgggagagctgggacacgtggaggcaatcttacagcagagcgccgacgacattcagagg
gcagagactctgctggaccaggcccgccaagccagtaagcaggcgacagatacgaaggac
tctgcagagaaagtgaaacaagctctggaagaagctcagagagctcacacagctgccagc
agcgccatccagcaggccacctccgacatccagaccaccgccaagctgctctcctccgta
gagacggagacggcagacgcagagtcaaagctggacaacgccacccagaggctgcagagg
ctcgagcaggatgtgaagctgctcgccgacagatccgcaaacgttactcagagaaccaag
ctggccgatcaggaagccgcagacatcggaaggatcgcagaggaggtcaaaaaggagttt
gagtcggaggtgaagcaaaagtacagcacagtggaacagctgatagatcagaaagcgggg
ggtgtggccgacgctaagaagagggcggagtcactgcagaaccaggccaaacagctgctg
ctgcaagccagcgacaagttgcagctgctgaaagatctggaaaagtcgtacgatgacaat
cagcgaactcttgagttgaaagctgaacagctggttgagatggaggcagcagtgaagaag
ctgctgcaggaaatcagccataaggtcaccctctacagcacctgcttcttttag
DBGET
integrated database retrieval system
