Xiphophorus maculatus (southern platyfish): 102229539
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Entry
102229539 CDS
T02923
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102229539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102229539
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102229539
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102229539
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
102229539
NCBI-ProteinID:
XP_014329255
Ensembl:
ENSXMAG00000010366
UniProt:
A0A3B5Q5V7
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Position
17:2997620..3009759
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AA seq
523 aa
AA seq
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MFGATRKKFMEGGIESEYSSDDSSLYYNHTSMFAPHRADKDMLSSSSSSSQLSQLGASLY
APQSALGFPIRGINSSAAPQLSRSSLTQPAGQLSNHTSTPNSGPLHTPSSPNRASIMPLT
SSRSVLNHNQQVGGPTGQTGGGERGGGGTGRSATMGSPSRSSPSIIGMPKQQQARFSFNR
NPGFNMSNSLTSNIFNGTDGSENVTGLDLSDFPALADRSRRDGSSNPTPQLNPLAGRAPY
VGMVTKPSSEQSQDFSIHNEDFPALPGPNYQTKDPSSNSDDKTNLNSSGKASSSADGPKF
PGDKSSAPSNNNQQKKGIQVLPDGRVTNIPIGMVTDQFGMIGLLTFIRAAETDPGMVHLA
LGSDLTTLGLNLNSPENLYPKFASPWASAPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLS
RYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNAYERG
TYYFFDCLNWRKVAKEFHLEYDKLEERPHVPSTFNYNPAQQAF
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtgctaccaggaagaagttcatggagggggggatcgagagcgagtactcttcg
gacgactccagcctctactacaaccacacgtccatgttcgctcctcaccgggccgacaaa
gacatgctgtcgtcttcctcctcatccagtcagctgtcgcagctgggagccagtttatac
gccccacagagtgctctgggtttccccatccgtgggatcaacagcagcgcggcgccgcag
ctcagtcgaagctcgctgacccaacccgccggccagctctccaatcacaccagtactccc
aactccggaccgctgcacacgccctcgtcgcccaacagggcctccatcatgcccttaacc
agcagccgcagcgttctgaaccacaaccagcaggtgggcggtcccacggggcagacgggc
ggaggagagcgaggcggcggcggcacagggcggagcgcaaccatggggagtcccagcagg
tcgtctcccagcatcatcggcatgcccaaacagcagcaggcgcggttctccttcaacagg
aatccagggttcaacatgagcaactccttaaccagcaacattttcaacggcacagacggc
agtgagaatgtgacggggttggatctgtccgacttcccggcgttggcagaccggagccgg
agagacgggagttcgaacccgaccccgcagctgaacccgctggccggccgggcgccctac
gttggcatggtaaccaagccatccagcgaacagtcgcaggacttttcgatccataatgaa
gatttcccagctctccccggtccaaactaccaaactaaagatcccagcagcaacagcgac
gacaaaacgaacctgaactcgtcgggaaaggcgtcttcgagcgccgacggtcccaagttc
cccggcgataaaagctcggctccgagcaacaacaaccagcagaagaaaggcatccaggtt
cttcccgatggccgagtgaccaacattcccatcggcatggtaacggaccagtttggaatg
atcggcttgttgacgttcatccgggcggcagagacggatcccggcatggttcacctagcg
ctcggctcagacctcaccacactgggcctgaacctcaactcacctgagaatctgtatcct
aagtttgcgtctccatgggcgtcggcgccatgtcggccgcaggacatcgactttcacgtc
ccgtcagagtatctaaccaacatccacataagggacaagctagcagccattaagttgtct
cggtacggtgaagatctgctgttttatctctactacatgaacggaggagacctgctccag
ctgctggctgcagtagaactttttaaccgggactggcggtatcataaagaggagcgggtt
tggataacgcgggcccctgggatggagcccacgttaaagaccaacgcctacgaaagaggg
acctactacttcttcgattgtctcaactggaggaaggttgccaaggagtttcatcttgaa
tatgacaaactagaagagcgacctcatgttccctccactttcaactacaatcctgcccag
caggccttctga
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