Xiphophorus maculatus (southern platyfish): 102229634
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Entry
102229634 CDS
T02923
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03013
Nucleocytoplasmic transport
xma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102229634 (upf2)
03015 mRNA surveillance pathway
102229634 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102229634 (upf2)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102229634 (upf2)
mRNA cycle factors
P-body specific factors
102229634 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
102229634
NCBI-ProteinID:
XP_005811241
Ensembl:
ENSXMAG00000017209
UniProt:
A0A3B5PUU1
LinkDB
All DBs
Position
17:complement(597647..620234)
Genome browser
AA seq
1275 aa
AA seq
DB search
MPAESKPSVNMDEKDVNSFTNKEKEKDKEAEWRAASGRDKAKEEAKASGKKDAGKEEKKK
RLEEEKKKKEEKERRKKEEEKQKAEEDQKKKEEEEKKQQEELQKKLEEDEAKRQREEEAA
LLKEKEEGHQLHQEAWERHQGRKELRSRNQNAQEARPEEAFFSRLDSSLKKNTAFVKKLR
TLTEQQRDTLSNDFASLNLSKYIGEAVSSLVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRRVKLAAEKFGLAFPPSEIISTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQTLADL
LDENMPELPQDKTVQEEHGPGIDIFTPGKPGEYELEGGIWEDEDARNFYENLIDLKAFVP
AILFKDNEKSGLSKDKDDAKDGREGKDVSTTEELELELEALDIADEPLELEGGDEVENEE
LAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRR
KLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIET
KNKTVRFIGELSKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETCGRFLFRSPDSHL
RTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPIEKAVKKKRPPLQEYIRKLLYKD
LSKVTTEKVLRQMRKLPWQEPEAKGYLICCMINIWNIKYNSIHCVANLLAGLVAYQEDVG
IHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVVFRTLFSFISFGVN
PDGSPSPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKKSVDVW
TKDHPFPIDIDYMISDTLELLRPKMRLSCSLDDATRQVADLEREVLVKLGMAMEKDGRSS
AMSEGEPLDEEDEDEDEEGAADTEEQSGNESEMNEQEEDEGSENEEEEREEEEEENTDYL
TDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLD
VAIPLQLKSQLKKGGSGQQCMGEGDSDISDTMQFVMLTRKGNKQQYKILNVPLSSHLAAN
HFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSFAQRPAPANTNRERRPRYQHPKG
APNADLIFKTGGRRR
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgagagcaagccctcagtaaacatggatgaaaaagacgtcaactccttcacc
aacaaagaaaaagagaaggacaaagaggctgaatggagggcggcatctggtagagacaag
gctaaagaagaggcgaaagccagcggtaaaaaggatgcaggcaaggaggagaagaaaaag
cgcttagaggaggaaaagaagaagaaagaggaaaaggagcgaaggaagaaagaggaggaa
aagcagaaagcggaggaggatcagaagaagaaagaggaggaggagaagaagcaacaggag
gagctgcagaagaagctcgaagaagatgaggccaaacggcagcgtgaggaagaggcagct
ctgctcaaggaaaaggaggagggccaccagctgcaccaggaggcctgggaacggcatcag
ggccggaaggagctccgcagccggaaccagaacgcccaggaggcccgacccgaggaggcc
ttcttcagccgcctggactccagcctgaagaagaacacagccttcgtcaagaagctgcgc
acgctgacggagcagcagcgcgacacgctctccaacgacttcgcctcgctcaacctcagc
aagtacatcggtgaggcggtgagctcgctcgtggaggccaagctgaagatctccgacgtg
ggctgcgccgtgcacctgtgctccctgttccaccagcgctatgctgagttcgcgccactg
ctgctacaggcctggaagaagcactttgaggccaggaaggaggacaaggcgcccaatgtg
agcaagctccgcaccgacctgcgcttcatcgccgagctcaccatcgtcggcctgttcacc
gacaaggaggggctgtcgctgatctacgagcagctgaagaacatcatcgggacggaccgc
gagacgcacactcacgtgtcggtggtgatcagcttctgcaagcactgcggcgacgacatc
gccggtctggtgccgcgcagggtgaagctggcggcggagaagttcggcttggcgttcccg
ccgagcgagatcatcagcaccgagaagcagcagccgttccagaacctgctgagggaatac
ttcacctcgctgaccaaacacctgaagaaggaccaccgggagctgcagaacatcgagagg
cagaaccggcggatcttgcactccaaaggggagctgagcgaagatcgccacaagcagtac
gaggagttcgccacgtcttaccagaagctgctggccaacacgcagacgctggctgacctg
ctggacgaaaacatgccagagctgccgcaggacaagacggtgcaggaagagcacggcccc
ggcatcgacatcttcacccccggaaaacccggagagtacgaactggagggcggcatctgg
gaagacgaagacgcgcgaaacttctacgaaaacctgatcgacctgaaggcttttgttccc
gccatcttgttcaaggacaacgagaagagcggcctgagcaaagacaaggacgacgccaaa
gatggcagagaagggaaggacgtgagcaccacagaagagctggagctggagctggaggcg
ctggacatcgcagacgagcctctggagctggagggaggagacgaggtggagaacgaggag
ctggccaagaagctgctggatgagcaagagcaagaagacgaggaggccaacaccgggtcg
cacctgaagttgatcgtggacgccttcattcagcagcttcctaactgtgtcaacagagac
ctgatagacaaggccgccatggacttctgcatgaacatgaacaccaaatccaaccggagg
aaactggtccgggccttgttcaccgtccccaggcagaggttggatcttctgcctttctac
tctcgcctggtggcgacgctgcatccctgcatgtcagacgtagccgaggatctttgctcc
atgctgaagggagacttcaggttccatatccgtaagaaggaccagatcaacatcgagacc
aaaaacaaaacggtgcgattcatcggagaactttccaagttcaagatgttctcaaagacc
gacacgcttcactgcctgaagatgctgctgtctgatttcacccaccaccacatcgagatg
gcctgcacgctgctggagacctgcggccgcttcctgttccgctcgcccgactctcacctg
cggaccagcgtcctgctggaacaaatgatgcgtaaaaagcaggcgcagcacctggacgcg
cgctacgtcaccatggtggagaacgcctactactactgcaacccgccgcccatcgagaag
gccgtgaagaagaagcggccgccgctgcaggagtacatcaggaagctgctatacaaggac
ctgtccaaggtcaccacggagaaggtgctgcggcagatgcgcaagctgccgtggcaggag
cccgaggcgaagggctacctgatctgctgcatgatcaacatctggaacatcaagtacaac
agcatccactgcgtggccaacctgctggccggcctggtggcgtaccaggaggacgtgggc
attcacgtggtggacggcgtcctggaggacatccggctcggcatggaggtcaaccagccc
aagttcaaccagcggcggatcagcagcgccaagttcctgggtgagctctacaactaccgc
atggtggagtcggccgttgtcttccggacgctcttctccttcatctccttcggggtgaac
ccggacggcagccccagcccgctggacccgcccgagcacctgttccgcatccggctcgtc
tgcacgctgctcgacacctgcggccagtacttcgaccgcggctccagcaagaagaagctc
gactgtttcctcatctacttccagcggtacatttggtggaagaagagcgtggatgtttgg
acaaaggaccacccgttccccatcgacatcgactacatgatcagcgacacgctggagctg
ctgcggcccaagatgcggctcagctgctcgctggacgacgccaccaggcaggtggccgac
ctggagagggaagttctcgtcaaactgggcatggccatggagaaggacggccgctccagc
gccatgagtgaaggcgagccgctcgatgaggaagacgaggatgaggatgaagagggagcc
gctgacaccgaggagcagtcgggcaacgagagcgagatgaacgaacaggaagaggatgaa
ggatctgagaacgaggaagaggagcgtgaggaagaggaggaggagaacacagattacctg
accgactccaacaaggagaacgagacggacgaggagaacaatgaagtgacgattcgcggc
ggaggactgaagcacgtcgcctgcgctgaggacgaagacttcatccaggctctggataag
atgatgctggagaacctgcagcagcgcagcggcgaggcggtgaaggtgcaccagctggac
gtggccatcccgctgcagctgaagagccagctgaagaagggcggctcgggccagcagtgc
atgggagagggagactcggacatctctgacaccatgcagttcgtcatgctcacccgcaaa
ggaaacaagcagcagtataagatcctgaacgtccccttgtcgtctcacctggcggcgaac
cacttcaaccagcagcaggcggagcaggaggagaggatgaggatgaagaaactcaccctg
gacatcaacgagaggcaggagcaggaagactaccaggagatgatgcaatcgtttgcccag
cgtccggctccggccaacaccaaccgggagcgccggccgcgctaccagcacccaaaaggc
gctcccaacgccgacctcatcttcaaaaccggaggaaggagacgctga
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integrated database retrieval system
