Xiphophorus maculatus (southern platyfish): 102229950
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Entry
102229950 CDS
T02923
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xma03016
]
102229950 (tarbp1)
03036 Chromosome and associated proteins [BR:
xma03036
]
102229950 (tarbp1)
Enzymes [BR:
xma01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
102229950 (tarbp1)
Transfer RNA biogenesis [BR:
xma03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
102229950 (tarbp1)
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
102229950 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
102229950
NCBI-ProteinID:
XP_014327438
Ensembl:
ENSXMAG00000009600
LinkDB
All DBs
Position
22:complement(11299493..11313670)
Genome browser
AA seq
1626 aa
AA seq
DB search
MSSTLIQAVLSSSPNYDTLFESLCWPEDSWPQTERVEALTALIETLGPFLTDSDSAQTPL
TGVNRSGIRDKIESVIWSKCLPFLCRLSAEARDDTRCRESTATVCRLLGVSVGVCGENVR
TGVVSSILPSLQRMSEEEPLTPGTLSVQVAAEVLAALMPLLTADEELTLDTLNCALSSVR
SLPDDLVSKVMVRIILTSLSCCSDARSNIILKRILDDVCSWHSTERTPVVTERTLLCLTV
LSDHLLKSHIATSSECREADPRLRPQFWIICQDGLTHRDSVSRKRALYLLKRCAALSEEE
GFDSRSSTSEDGETLFKWAPSKSKPLREFWEDYTLVMETLEENQVHVVRPVLNRIDTLIQ
ATVNDSEGSGLFHPSWLLCVYQRMFHSENKSLMREGVCHLLQLQVLQQPAFAAAFSQFVV
GSFMNVLSETSLFCRSPGQSVGDCPELAVKLQVFLVTFFTSLPSEDRGCVLFQLIQQLSS
KHWCAVPLLFVCQAFSHLPPCPLLKIGGLSALREVLRCTMITHQVLLRGAAQCFLLKSAL
SLTDVNEVTVDDIFSFLMHFRADESLCRGTELWNELCIWLLEHECSFKSRILDGDFTDDP
TQKETIRAYVQQEVLAYLCVPASTGQAERLPDTREADKLARALLLCVDMERRRLGGETSE
ILGSLLSPLLDTLSRVYTNIYLPVRKSDKSLQLLLRLLQLGTKPCGQEKEVEEDEVMFAI
EQTFLKLVDPVQDFILRRLCGELQELFDVERAELYLCVLRQLVVMCSSSSRCPKNIQQFA
FPRLIKYSLSVLLEPTQQVPSVANQVSKAVSMASLAAVCELLQQGGISMRADTASALKSM
NDYFCTLKTSSQFQSSLGNINKSLMKPQLLGSSSDLEAQGLLQQDWGRIAANFLRDQWIC
LNFLIRTVGIKASVEISQVSETLGAALSCSVEALALLPSDFVLPVLNFMNTLLPQLVQDQ
ENLCVQAVTLSWELVQGLSTNAHDFWPALKGFISMAFQHKLLQLTHDQAPILTTALTKIF
TDLLELSQSKSGVFGVLLQHCCQTWLPNDPAIRDQAAAVFSSVFNHLDIVTEACVYGPVF
RRDQRLVLDVQIYVEQLGAKCAANVAVTSDTRDDQLPRTCVLTFLSRLDPSDQQHQRFME
ELVMELLRKDSLISKSKVRYYGNSLQHRVKNRAWQTLLLLLPKLKEDFVATLVNHVFEAG
FCSNQASVKYLIEWMMILILVKYPHHIEKFWSCFNFDHEKTKTSICTFLSVLVHFNVIIP
HVKDKVWQLRRALDVILQSCFNHNFSVRLYALLALKKVWSLAEKEEEDDEAFQGLSSVVT
ACLNQAETMQSTGNANKNWLRIQGHFFFGAFHPIRDYSMETIFQTFPSLSELADDEWIPP
WKFEKLSFFPESLLIPLRNSAPELGQLQAGDWVQQDRSEQDKEERWSEVQKKITPWRSGI
NDQEPELKLVPAQRAARLGKQHGTLLVVASLIDKPTNLGGLCRTCEIFGASGLVLDSLHH
LNDKHFQSLSVSAELWLPLLEVKPVELTHFLQVKKSEGYCIVGVEQTANSQKLQDFKFPE
KTLLLLGNEREGIPANLLQMLDVCVEIPQQGIIRSLNVHVSAALLIWEYTRQRLITGSQE
VHSHCG
NT seq
4881 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccactttgattcaggcggtactgagcagctctcctaattacgatactttgttt
gaatccctgtgctggccggaggattcgtggccgcagacggagcgtgttgaggcgctcact
gctctcatcgaaactctcggaccgtttctgaccgattcagattcggctcagactccactg
acaggtgtaaacagaagtggcattcgtgacaaaatcgagtcggtcatttggtcgaaatgt
ctgccatttctttgcagactctcggcagaagcaagggatgatacgcgctgcagagagagc
acagccactgtctgcagattgctcggtgtctccgtgggtgtttgcggggaaaacgtgcgg
actggagtggtttcatcaatcctgccgtcgttgcagcggatgtcagaggaggagccgctt
acgccggggactctcagtgtgcaggttgctgctgaagtcctggctgctctcatgcctctt
cttacagcggatgaagaactcacactcgacactttaaactgcgcgctgtcctctgtcagg
tcactccccgatgatctggtatccaaagtaatggtcaggatcattttaacttcgctcagt
tgctgcagcgatgcgaggtccaacatcatcctcaagcgcatcctggatgatgtttgcagc
tggcactccacggagcgaacaccggtggtcacagagaggacgctgctgtgtttgaccgtc
ctgtcagaccatctcctgaaatctcacatcgccacctcctccgagtgccgcgaggccgac
ccacgtctgcgtcctcagttctggataatttgtcaggacggactgacgcacagggacagc
gtgtcacgcaagagggcactgtacctgttgaaaagatgcgcagcattatccgaagaggag
ggctttgattcccgttcttctacatcagaggatggagagacattgtttaaatgggccccc
agcaaaagcaaaccgctgagggagttctgggaggattacactctggtgatggaaacgctg
gaggagaatcaggttcatgttgttcggccagttttaaacagaattgatacgttaatccaa
gcaactgtgaatgatagtgaagggtcaggcctgttccacccatcctggctgctgtgtgta
taccagcgcatgttccacagtgagaataaatccttaatgagagaaggagtgtgccatctg
cttcagctgcaggttcttcagcagccggcctttgcagcagccttttctcagtttgtcgtg
ggttccttcatgaatgttctgtctgaaacgtcccttttctgtagatcgccagggcagagt
gtaggagactgtcctgagctggcagttaagctccaggtcttcctggtcaccttcttcaca
agcctgccatcggaggacagaggttgtgttttgtttcagctgattcagcagctcagctcc
aagcactggtgtgccgtaccgctcctctttgtctgtcaggctttttcacatctccctcca
tgtcctctgctgaagatcggcggcctatctgctctacgggaggtgctacgctgcaccatg
atcactcatcaggttctgctaagaggagctgcacagtgttttttactaaagagcgccctc
tctctgacagatgtgaatgaagtgactgtagatgacatatttagtttcctgatgcatttt
cgtgctgatgagtctttgtgtagggggacagagctgtggaatgagttgtgcatctggtta
ttagaacatgaatgcagcttcaagtccagaattctggacggcgatttcaccgatgatccc
acacaaaaagaaaccataagagcctatgttcaacaagaggtacttgcttatctttgtgtt
ccagcaagcacaggtcaggcagaacggttacctgacactagagaggctgataagctggca
agagcccttctgctctgtgtggacatggagaggaggcgactgggaggagaaaccagtgaa
attctgggttcactgctgtctccgctactggacaccctgagcagagtctacaccaatatc
tacctgcctgtccgtaaaagtgacaagagtctgcagctcctgcttagactgctgcagctt
gggacgaagccttgtggtcaggaaaaagaagtggaagaggatgaggtgatgtttgctatt
gaacaaacctttcttaaacttgtcgacccagtccaggattttatcctgaggaggctgtgt
ggggagctgcaggagctctttgacgttgaacgggctgagctgtatctgtgtgtcctgagg
cagctggttgttatgtgcagctcttcgtctcgctgccccaagaacatccagcagtttgct
ttccccagactcataaagtacagcctttcagttttgcttgagccaacccaacaggtccca
tctgtggccaatcaggtgtccaaggctgttagtatggcttctttggctgctgtgtgtgag
ctcttacagcaaggaggaattagtatgagagcagatactgcttctgccctgaagtccatg
aatgattatttctgcactttgaagacttcctcacagtttcagtcatctctcggaaacatt
aacaaatccttgatgaaaccacagctattaggtagttcaagtgaccttgaagcccaaggc
ctcctgcaacaggactggggacgcattgctgccaacttcttgcgggaccagtggatttgt
ctaaacttcctgattaggactgtagggattaaagcatctgtagaaatttcccaagtgtcc
gagaccctcggagctgctctgagttgcagcgttgaggccctggctctgctgcccagtgac
tttgtgctgcccgtgctaaacttcatgaacacgctgctgccacaattggtgcaggatcag
gagaatctctgtgtgcaggcggtcactctgagttgggagcttgtacaggggcttagcaca
aatgctcatgacttctggccagcactaaagggcttcatctccatggccttccagcacaaa
ctcctgcagctgacacatgatcaggctccgattctcacgactgcactgacaaagattttc
acagacttgttggagctgtctcagtcgaagagcggtgtcttcggcgtgctacttcagcac
tgctgtcagacctggctgcccaatgacccagccatcagggatcaggctgctgctgtgttc
tctagtgtttttaaccacctggatatagtcactgaggcctgtgtttatggaccagtgttc
aggagagaccaacgactcgtcctggacgtccagatatatgtagagcaacttggtgcaaag
tgtgccgctaatgttgcagttacaagtgataccagggatgatcaactgccccgcacatgt
gtgctgacatttcttagccgcctggatccttctgatcagcagcatcagagattcatggag
gaattagtgatggagctgctgagaaaggacagtctcatatcaaagtccaaagtccgttac
tatggtaactccctgcagcatcgggtcaaaaacagagcatggcaaacactgctgctgttg
cttcccaaactcaaagaggattttgttgccactctggtgaaccacgtctttgaagctgga
ttttgcagcaaccaggcctccgtgaagtacctgattgaatggatgatgattcttattctt
gtcaaatatccgcatcatattgagaaattctggagctgcttcaactttgatcatgaaaag
accaagacgagcatctgcaccttcctgtctgtcctggttcacttcaatgtcatcattcca
catgttaaggataaggtctggcagctgcgtagagctctggacgtcatcctgcagtcgtgt
ttcaaccacaacttcagcgtgcgcctgtatgcattactggcgttgaagaaggtgtggagc
ctcgcagagaaggaggaagaggatgatgaagctttccagggactgtcttctgtggtgaca
gcctgtctgaaccaggccgagaccatgcagagcactggaaatgccaacaagaactggctg
aggattcagggtcacttctttttcggagcctttcatcccatcagggattacagcatggag
accatatttcaaacttttcccagtctgtcagagttggccgacgatgagtggatcccaccg
tggaagtttgaaaagctgtcattctttcctgaaagtctgttaatcccgttgaggaattct
gctcctgagttgggccagctccaggctggagattgggtccagcaagatcgaagcgagcag
gataaagaggagcgctggtctgaggtgcagaagaagatcacaccgtggaggtcagggatc
aacgatcaggaacctgaactgaagctggttccagctcagcgggcagctcggctgggcaaa
cagcacggcaccttgctggtggtggcctccttgattgacaagcccactaatttaggaggt
ctctgcagaacatgtgagatatttggggcgagcggtctggttctggacagtctacaccat
ctcaatgacaaacacttccagtctctgagcgtttcagctgagctttggcttcctttgcta
gaggtgaagcccgtggagctcactcatttcctccaggtaaagaagagcgaaggttactgt
attgtcggagtggagcagactgccaatagtcagaagctccaggacttcaagttccctgaa
aaaactctgctacttctgggcaacgagcgggaaggtattcctgccaatctgctccagatg
ttggacgtgtgtgtggagatcccgcaacaagggatcatccgctcactcaatgtccacgtg
agcgctgccctgttgatctgggaatatacgcggcagcgcctcatcaccggatcacaagaa
gtccactcacattgtggctga
DBGET
integrated database retrieval system
