Xiphophorus maculatus (southern platyfish): 102229972
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Entry
102229972 CDS
T02923
Symbol
pcdh18
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xma04515
]
102229972 (pcdh18)
Cell adhesion molecules [BR:
xma04515
]
Cadherins
Protocadherins
102229972 (pcdh18)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PAG
Cadherin_C_2
TMEM154
Motif
Other DBs
NCBI-GeneID:
102229972
NCBI-ProteinID:
XP_023184542
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Position
23:31000657..31011369
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AA seq
1235 aa
AA seq
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MIQAKGNVHSTVPLALLLLLVALLQGSTGKTLKYKVYEEQRVGTVIARLKEDVAGVLSKL
PNFLSFRFRAMQRGSTHLLSVREEDGEISIGTKIDREKLCEKNLNCSIEFDVVTLPTEYL
QLFHVEVEVLDINDNSPHFSRAIVPIEISESASVGTRIPLDGAVDADVGENSLHTYSLTP
NNFFKIDVRTRTDGAKYAELVVMRELDREVQSSYQLQLTASDNGVPPKSGSTLLKISISD
SNDNSPAFDEQAYVINLLENSPLGTLIIDLNATDPDEGTNGKIVYSFSSHVSPKILETFK
INPENGHITLIKKVDYETTASYELDVQAQDMGPNSIPGLCKIVVKIVDVNDNKPEISINL
MTPGKEEVAYISEGAPVDTFIALVRVDDMDAGLNGEVVCRLHGHGHFRLQKTHEKNYMIL
TNVSLDREKRSEYSLTVMAEDKGSPSLSTIKHFTVQVLDENDNPPHFEKSRYEVFKSENN
SPGAYLMTVVASDPDLGTNGQVTYTIIDAVIQASPISTYVTIDPSNGAIYALRSFDHEDV
SRVAFTVQARDGGNPALSANTTVLLTVLDENDNPPIIHSPSLRNHTAELPVWKYASPGQL
ISTLKITDRDSGANGEVSCSIVGGNEDGLFVMDARRCELRTNASLEQAPRDVMEIRIEVQ
DRGTSRLTTGALFKLSLQENMDILPPLYPTGSSQASLDLSLIVIISLGAVCALLLVVMVM
FATARCSREKKDPRHNYNCRVAENSYQNHPKKPARQIHKADITLVPTVNGTLPVRSHPRS
PLPSPTPERGTLGSRHSHHSRQSLNSLVTISSNHVAENFALELAHATPPVEQVSQLLSML
HQGQYQPRPSFRGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSDYEPGRESPVDRLLG
EAFTELYFPDGQHCSHAAMKLCTEECRVLGHSDQCWMPPLGCPASSSADYRSNLYIPGEE
AHQATDITQEKVPQPCTDTCTARNQSFSTFGKDLGGEDGAEEDGLEGGSKSTDEDLCGTT
SLLSEMSSVFQRLLPQGLDSYVQVNENQKGTSLSGVGVPMTGSLDRRRGHLPGKPSPSVH
QQGVAAWAANTHFQNPGSSIGPSGQHQVGSYHTLKANTKLSCQSSNHKGSQVPKNSPQNS
GQSPKPTSSPLLTGLVSPTLVQTSLAQTPVQATLNGPSSKWLPAMEEIPENYEEDDFDSV
LSHLQGKRSDSRHELVDASELVAEINKLLQDVRQT
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgattcaagccaaaggaaatgtccactccacggttccactggcgctgctgctgcttctg
gtggctcttctccaaggctccaccggtaagactcttaaatacaaagtttacgaggagcag
agagtggggacagttattgcacggctaaaggaagatgttgccggggttttgtccaaactc
ccgaatttcctgagctttcggttccgcgcaatgcagcggggcagcacgcacttactgtcc
gtccgggaggaggacggggagatcagcattggcaccaaaatcgatcgtgagaagctctgc
gaaaaaaacttaaactgctcgatcgaattcgacgtggtcacgctgcccacggagtacttg
cagctgtttcacgtggaggtggaggtgctggacattaacgacaattccccgcacttctcc
cgcgccatagtccccatcgagatttcagagagcgcatcagttgggacgcgcatcccgctg
gacggcgcagtggacgcagacgtcggagagaactccctgcacacctactctctgacgccc
aacaacttcttcaaaatagacgtgaggaccaggacggacggcgccaagtacgcagaactg
gtggtgatgagggaactggaccgtgaggtgcagtccagctaccagctgcagctcactgct
tcagataatggcgtgccccccaaatcaggatccactttactcaagataagcatctcagat
tccaacgacaacagccccgcgtttgatgagcaagcttatgtcatcaatttgctggaaaac
tctcctcttgggactctgatcattgacttaaacgccacagacccagatgagggtacaaat
gggaaaatagtttactctttcagcagccacgtttcgccaaagattttggaaacatttaaa
ataaatccagaaaatggccatatcactctcatcaagaaagtggactatgaaaccactgct
tcctatgagctggatgtccaagcccaggacatgggccctaattcgatccctggactttgc
aaaattgtggtgaaaatagttgatgtgaatgacaacaaaccagagataagcatcaatctg
atgactccaggcaaagaggaggtcgcctacatttcagagggggcccctgtggacacattc
atagctctggtacgtgttgatgatatggatgctggcctcaatggggaagtggtttgcagg
ctgcatggtcatggacacttcaggctccagaagacccatgagaagaactacatgatctta
accaatgtgtcgttggacagggagaagaggtcagaatacagcttgactgtcatggctgaa
gacaagggctcccccagcctgtctaccatcaagcatttcactgttcaggtgctggatgaa
aacgataaccccccacattttgagaaaagtcgctatgaggtttttaaatctgaaaataac
tcacctggagcatacttaatgactgtggtggcctcagatccagatctgggcaccaacggt
caggtcacatacaccattatagatgctgtgatccaagcgagccccatttctacctatgtc
accattgatccttccaatggggccatctatgccttacgcagctttgatcacgaggatgtc
agccgtgttgccttcactgtccaagctcgtgacggtgggaaccctgcactgtcagccaac
accactgtcctcctcaccgttctggatgaaaatgacaacccacccatcatccactctcct
tctctccggaaccacacagctgagcttccagtgtggaagtacgcatcacctggtcagctg
atcagtactctgaaaatcacagaccgggactctggtgctaatggagaggtgagctgttct
attgttgggggtaatgaagacgggttgtttgtgatggatgcccggcggtgtgagcttaga
accaatgccagcctggagcaggcccctcgggatgtgatggagattaggattgaggtacag
gacagaggaaccagtcggctaaccacaggagccctcttcaagctctccctgcaggagaac
atggacatcctccctcctctttatcccactggatccagccaggcctcgctggatctctcc
ctcattgtcatcatttctctcggtgctgtttgtgctctgctgctagttgtgatggtgatg
tttgcaactgcccgctgcagccgtgagaaaaaagatcccaggcacaactataattgccgt
gtggctgagaacagttaccagaaccatcctaagaagcctgccaggcagatccacaaggca
gacattaccttggtacccactgtcaacggaaccttacccgttcggtctcacccacgatct
cccttgccttccccaactcctgagagaggcactctggggagcaggcatagccatcatagt
cggcagtctctcaacagcctagtgactatctcctccaatcacgtggctgagaactttgcc
ttagagctagcccatgccacacctcctgttgagcaagtctcacagcttctgtccatgctc
catcagggccagtaccagccacgaccaagtttcagaggcaacaaatacactaggagctac
agatatgctctcaatgagatggataagttcagtctgaaggacagcggtcgtggagacagc
gaagctggtgacagtgactacgaaccaggaagggagtcgcccgtcgacaggctccttggt
gaggcctttactgagctatatttccccgatggccagcactgttcgcatgcagctatgaag
ctctgcacagaggagtgccgagttctgggccattccgatcagtgctggatgcccccattg
ggctgccctgcctcttcctctgccgactaccgtagtaatctctacattcctggggaggaa
gcccatcaagccactgacatcactcaggaaaaggtcccccagccttgcactgacacctgc
actgctcgcaatcagagcttttccacctttggtaaagacctgggtggggaagatggtgca
gaagaggatgggctggaggggggctccaagtccacagacgaagacctgtgtgggaccacc
tcactgctgtcggagatgagcagcgtgttccagaggttgctaccgcagggtctggattct
tatgtccaggtcaatgagaaccagaaggggactagcttgagcggtgttggcgttcccatg
acaggatctttagaccgtcggaggggtcatctacctggaaagcccagtccctcggttcac
cagcagggtgtagcagcctgggctgccaatactcacttccaaaatccaggaagtagcatt
ggcccatctgggcaacaccaagttggcagctaccacaccctcaaagccaacaccaagctc
agctgccagagcagcaaccataaagggtcacaggtgcctaaaaacagcccccaaaacagc
ggccaaagccccaaacccaccagcagcccactcctgaccgggctggtcagcccaacactg
gtgcagacttctttggcccagaccccagtacaagccacactcaatgggccctcttcaaaa
tggcttccagccatggaggagatcccagagaactatgaggaggacgattttgactcggtg
ctcagccaccttcagggtaagcgcagcgacagccggcatgagctggtggacgccagcgag
ctggtggctgagatcaacaaactcttacaggatgtccggcagacgtaa
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