Xiphophorus maculatus (southern platyfish): 102230194
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Entry
102230194 CDS
T02923
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
xma04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102230194
04518 Integrin signaling
102230194
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102230194
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102230194
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102230194
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
102230194
NCBI-ProteinID:
XP_005801795
Ensembl:
ENSXMAG00000016824
LinkDB
All DBs
Position
1:22511526..22538319
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLAVVRCQEEDDQEAGGCIQDARVYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADATAPIEAFGAKGQKGEPGEIADVVG
PRGPPGPMGPPGEQGTRGETGAKGDKGNPGPRGRDGEPGTPGNPGPHGPPGPPGPPGLGG
NFAAQMSAGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGETGEPGPAG
SIGPRGPPGPSGKPGSDGDPGKPGKSGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDG
AKGETGAAGAKGEGGAAGESGSNGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGSPGAKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGAGGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGESGPKGELGPAG
PQGAPGPAGEEGKRGARGEPGTAGPNGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVSG
AAGPKGATGDPGRTGEAGLPGARGLTGRPGDAGPQGKVGASGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKPGEKGLVGRSGVRGLPGKDGETGPSGPSGPAGPAGERGEQG
QPGPPGFQGLPGPTGSPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGSQGLQG
PRGLPGTPGSDGPKGAIGPAGALGGQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEG
APGKDGGRGLTGPIGPPGPSGPNGAKGETGPTGPSGAPGVRGAPGDRGELGPPGPAGFAG
PPGADGQPGAKGELGESGQKGEAGASGPQGSSGAPGPVGPTGISGPKGARGAQGAPGATG
FPGAAGRVGPPGPNGNPGGAGPAGPAGKDGPKGVRGDAGPPGRPGEAGLRGPPGASGEKG
EPGEDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGAGDRG
PPGPVGPPGLTGPAGESGREGTPGSDGPPGRDGSAGVKGERGNTGPAGAPGAPGAPGAPG
PVGPLGKQGDRGEAGTQGPAGPPGLAGARGIAGPQGPRGDKGEAGESGERGQKGHRGFTG
LQGLPGPPGPAGDSGSAGPAGPSGAKGPPGPLGPAGKDGSNGQPGPIGPPGPRGRSGETG
SAGPPGNPGPPGPPGPPGPGIDISAFAGLGQTEKSPDPLRYMRADEASSSLRQHDIEVDS
TIKSLNTQIENLRNPDGTQKNPARSCHDLKLCHPEWKSGDYWVDPNLGSTADAIKVFCNM
ETGETCVYPSITKVPKKNWWTSKSKDRKHIWFGETMNGGFHFSYAQDGLAASAANVQLTF
LRLLSTEASQNFTYHCKNSIAYMDQASGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDG
CKSHTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatctcaagttgtttta
ctagccgtggtcagatgtcaggaagaagatgaccaggaggcaggtggctgcatccaggac
gcccgggtgtataatgataaggatgtgtggaagccagagccgtgccgcatctgtgtgtgt
gacagcggagcggttctgtgcgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagaatgctgccccatctgccccgctgatgccactgcccccatt
gaggcgtttggtgctaagggccagaagggagaaccaggagagattgcagatgtcgtagga
cctagaggaccaccaggccccatgggccccccaggtgagcaggggacgcgtggagaaact
ggcgcaaagggtgacaagggaaatcctggaccaagaggaagagatggcgaacctggcaca
cctggaaaccccggaccccacggcccacctggaccacccggcccaccagggctgggaggg
aactttgctgctcagatgtctgcaggctttgatgaaaaggctggaggtgctcagatgggt
gtgatgcaaggaccaatgggtcccatgggtccccgtggcccccctggacctagcggagct
cctgggcctcagggtttccaaggagcacccggagagactggagagcccggtccagctgga
tcgattggacctcgtggaccacctgggccatctggaaaaccaggaagtgacggtgatcct
ggaaaacctgggaaatccggtgagcgcggacctgccgggcctcagggagctcgtggattc
cctgggacacctggacttcctggaatcaaaggacacagaggtcaccctggtctggatgga
gcaaagggagagactggtgctgctggagccaagggtgagggtggtgctgctggagaaagc
ggcagtaatggaccgatgggccctcggggtctacctggtgagaggggacgtcctggtgct
tctggagctgcaggagcccggggaaacgatggcttgcctggtccagctggtcccccgggc
ccagttggtcctgcaggagctcccggtttcccaggatccccaggcgccaagggtgaagca
ggtcctactggcgcccgtggagctgaaggagcacagggaccccgcggagaggccggcaca
ccaggatcacctggaccagctggggcggggggtaaccccggcactgatggtattcctggg
gctaaaggttctgctggggctcctggcattgctggcgcacctggcttccccggcccccga
ggcccacctggaccacagggagcaactggacctcttgggcccaaaggacaatctggagat
cctggtcttccaggactgaagggtgaatctggaccaaaaggagagctgggccccgctggg
cctcaaggggctcctggccctgctggagaagaagggaagcggggcgcgaggggagagccg
ggaactgctgggccaaacggacctccaggagaaagaggagctcctggtaaccgtggtttc
ccgggtcaggatggtcttgctggtgcaaagggagcccctggtgaccgtggcgtctctggt
gctgctgggccaaaaggtgccactggagaccctggacgtacaggcgaggccggcctgcca
ggagccagaggtcttactggtcgtcctggagatgctgggccgcagggcaaagttggagct
tctggcgctccaggtgaggacgggcgacccggtccacctggtccccagggcgcacgtgga
cagccgggtgtcatgggattccctggaccaaaaggagcaaatggtgaacctggaaaacca
ggagagaagggactcgttggtcgatctggtgtgagaggactacctggaaaagatggtgag
actggtccttctggaccttctggacccgctgggcctgctggagagagaggagagcaagga
cagcctggtcctcctggcttccagggtctgcctggcccaactggttccccaggagagggc
ggaaaacctggagatcagggtgttcctggagagggtggagctcctggtgctgttggaccc
agaggtgagcgtggtttccctggtgagcgcggtggcgctgggtctcagggtcttcaagga
ccgcgcggacttcctggaacaccaggaagtgacggacccaagggagcaattggaccagct
ggagctcttggaggtcaaggacccccaggcctgcagggtatgcctggagagagaggagct
ggaggcatcccaggagccaagggagacagaggtgataatggacagaaggggcctgaaggc
gctcctggaaaagacggtggtagaggtttgactggtcccattggtcctcctggcccatct
ggacccaacggtgccaagggtgagactggaccaactggtccttctggtgctcctggggtt
cgtggtgctcctggtgaccgcggtgagcttggtcctcctgggcctgcgggcttcgctgga
cctcctggtgcagatggtcagccaggtgctaagggagagctcggtgagtccggacagaaa
ggagaggctggtgcttctggacctcagggatcctccggagctcctgggcctgtgggacct
actggcatatctggacctaagggagcacgcggtgcccagggagctcctggagcaacaggt
ttccctggtgctgctggcagagttggacctcctggtcccaatggtaaccctggcggtgcc
ggtcctgctggtcccgctggtaaggacggtccgaaaggtgttcgcggtgacgccggtcct
ccaggacggccaggagaggctgggcttcgtggaccacctggagcttcaggagagaaggga
gagcctggagaggatggacctcctggagctgatggcccttcaggtccgcagggtttggct
ggaagtcgtggtattgttgggttgcctggtcagcgcggtgagagaggtttccctgggctc
cctggaccttctggagagcctggtaaacagggagcatctggtggtgctggtgaccgagga
ccgcctggacccgttgggcctcctggactcaccggacctgcaggagaatcaggcagagag
ggtacgcctggatcagatggaccacctggtagagatggatctgctggagtcaagggagag
agaggtaacaccggtcctgcaggcgctcccggagctccaggcgcccctggggctcccggg
ccagttggacccctaggcaaacagggagacagaggagaggctggcactcaaggacctgca
ggacctccaggactggctggcgctagaggaattgctggaccccaaggaccacgtggagat
aagggggaggcgggtgagtctggagagagaggtcagaagggtcaccgtggcttcaccggt
ctgcagggtcttcctggacctccaggtcccgctggagattccgggtctgctggacctgct
ggaccaagcggcgccaagggtccccctggtccacttggacctgctggcaaagacggatcc
aatggacagcctggtcccattggaccccccggacctcgaggacgctctggagaaactggt
tctgctggtcctcctgggaaccccgggccccctggtcctcctggcccaccaggtccaggc
attgacatctccgctttcgctggcctgggccagactgagaagtctcccgatcctctcagg
tacatgagggctgatgaggcctccagctccctgaggcagcatgacattgaggtcgattcc
acaatcaagtccctcaacacccagattgagaacttgcgcaaccctgacggcacccagaag
aacccggctcgctcttgccatgacctaaagctgtgccaccctgagtggaagagcggtgac
tattgggtggatcctaacctcggaagtacagccgacgcaatcaaggtcttctgcaacatg
gagacaggagagacctgcgtctacccaagcatcacaaaagtaccaaagaagaactggtgg
accagcaagagcaaggaccgcaaacacatctggttcggagagacaatgaatggcggcttc
cacttcagctatgctcaggacggtcttgctgccagcgctgccaacgtccaactgaccttc
ttgaggcttctgtccactgaagcgtcccagaactttacttatcactgcaagaacagcatt
gcctacatggatcaggcctcaggaaacctgaagaaggcgttgctactgcagggctccaac
gacgtggagatccgcgccgagggcaacagtcgcttcacatacagcgtgttggaggatggc
tgcaagagtcacacaggccggtggggcaagactgtctttgagtacaaaacacagaaaacc
tcccgtctgccaattgtagacattgctccaatggacatcggaggagcagatcaagaattc
ggagtggatataggcgccgtctgcttcttgtaa
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integrated database retrieval system
