Xiphophorus maculatus (southern platyfish): 102230498
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Entry
102230498 CDS
T02923
Name
(RefSeq) short transient receptor potential channel 2-like
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xma04040
]
102230498
Ion channels [BR:
xma04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
102230498
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
PKD_channel
Ank_2
Motif
Other DBs
NCBI-GeneID:
102230498
NCBI-ProteinID:
XP_005814350
Ensembl:
ENSXMAG00000010372
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Position
11:complement(20766827..20777644)
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AA seq
1090 aa
AA seq
DB search
MIATVLSSLIEREHTSLLVSFTSISEAHNSWWISTSCLQRLIRLLLLDHNVKEWIGLSSR
MENLTPEQWREIMNKKMRFPPALLSAIQEGKIEMLCGLLKTGDGIIRQLDESEDRQWREA
LNLSIRLGNEDAMDALLQGVKFDFRQIHEALLVAVDTNQPKVVKRLLDRLDQEKGNKMDV
RSFSQAIFDRSIDNSQFAPGVTPLTLACQKDLYEIVTMLTQKGHGIPWPHKISCACLECR
NGRQYDLLKFSLSRINTYRGIASRAYLSITSSDAMLSAFSLSRELRRLSQKEPEFKPQYL
DLEQLCQEFAVELLGMCRNQSEVTTILNSCGDESQDALDQEAFEEGIPNLSRLRLAVNYN
QKQFVAHPICQQVLSSIWCGNLAGWRGSRTAWKLLVSVGIFLTMPFLCLVYWIAPKSKAG
KMVRIPVIKFLLHSASYLWFLITLLGESIIMEMYRDKFASRQQNILHSSFHMVWVVGFFW
YECKEVWIEGLRSYFLDWWNCLDMIVLSMYLASFALRVLIMVKGHFLCHDQSNSDECIYF
TQTGRDNWRQEDPQLISEVLFAVTSMLSFTRLAYILPAHESLGTLQISIGKMIDDMMRFM
FILMIIGTAFLCGINNVYVPYVISPHLGRFNETFNFLFWTMFGVANQDYVDMPQFVLAEF
VGRILYGIFTLVIVIVLLNMLIAMITNSFQKIEDDADVEWKFARSKLYLSYFREGLTMPV
PFNIIPSPKAVFYILRGFFKCLCCCCNFNSEQKYPPVASMSNDKGTEDNLPYRQQVIRAL
VQRYIESARREFEETKRKDIGNRITELNKAVSRMHLEMKGIQQLLMTDGHAANDALTKDG
SSVLGKYIIGAKNNFRGFNSSQDDKSTSLKVTVHQKEEGADERKADSEARQDTDTQLDQV
DESEEEELGKAADCEVVKMEEGRAKTELGDWKETENTELVEVSKGDDGVKEDFSEGTGFI
RVEEKVKVESIQGKEDKREGDIDPKVTENLAEIRPEHIESSKTSFETTDAKKTINKFNNM
ELKEKPDEAGWMKGKKYGGNVVERSHVTKGDEKTGNKKVIQSPTGSSSSNDTGFGSQEGE
GSIDGTPVKP
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgatcgccacagtgctcagttcgctgattgaaagggaacataccagtcttttggtatct
ttcacctccatctctgaagcgcataatagttggtggatatctacttcatgtctccaaaga
ctgatcaggcttttgcttttggatcacaacgttaaagagtggattggtttgtcatcaaga
atggaaaacctcacgccagagcaatggcgagagatcatgaacaagaagatgcgcttccct
ccggcgctcctcagtgccattcaggagggaaaaatagagatgttgtgtggactgctgaag
actggggatggcatcattcgccagctggatgagtcggaggaccgccagtggagggaggct
ctcaacctctccatccgcctgggcaatgaggatgccatggatgcccttctgcagggagta
aagtttgacttccggcagattcacgaggctctgctggtggctgtggacacaaaccagccc
aaggtggtgaaacgcctgttggaccgcctggaccaggagaaaggcaacaagatggatgta
cgatccttctctcaagccatcttcgaccggtccattgacaactcacagtttgcccctggt
gtcacacctctgacacttgcctgtcagaaagatctttatgaaatagtcaccatgctcact
cagaaagggcatggcatcccatggcctcataagatatcctgcgcctgtctggagtgtcgc
aacggccggcagtacgacctgctgaagttctccttgtctcgcatcaacacctaccgtggc
atcgccagccgtgcctatctgtccatcacctccagcgatgctatgctcagcgccttcagt
ctcagtagagagctccgcaggttgtcccaaaaagagcctgaatttaagcctcagtacctg
gacctggagcaactctgtcaggagtttgccgtcgagttactgggcatgtgccgtaaccag
agtgaagtcaccacaatcctgaacagctgtggagacgagagccaggacgctttggaccag
gaggcctttgaggagggaatccccaacctgtcacggctgaggcttgcagtcaactacaac
cagaagcagtttgtggcccatccgatctgtcagcaggttctttcttccatttggtgtgga
aacctggcagggtggagaggcagcaggacagcctggaagctcctcgtctctgttgggatc
tttctaaccatgccttttctttgcctcgtctactggatagctccaaagtcgaaggcggga
aaaatggttagaatccctgtgatcaagtttctgcttcattctgcgtcgtacttgtggttt
ctcatcacattgctcggagaatccataattatggagatgtatcgtgacaaatttgcatcc
cgtcagcagaatattctgcacagctcattccacatggtgtgggtggttggattcttctgg
tatgagtgtaaggaagtctggattgagggcttgcgaagctacttcctggactggtggaac
tgcttggacatgattgtgttgagcatgtacttggcatcctttgccttacgtgtgctcatc
atggtcaaaggtcacttcctgtgccatgatcagagcaacagtgacgagtgcatctacttt
actcagactggtcgtgacaactggcgccaggaggaccctcagctcatctccgaggtgctg
tttgcagtaaccagcatgttgagcttcacccggttagcctacatcctgccggcccacgag
tccctgggaacgctgcagatctccattgggaagatgattgatgacatgatgaggttcatg
tttatactgatgatcatcgggacggccttcctctgcggcatcaacaatgtctacgttcct
tatgtcatctctccacatcttggcaggtttaatgagaccttcaacttcttattctggacc
atgtttggtgtggccaaccaggactatgtggacatgccgcagtttgttttagcggagttt
gtaggaaggatcctgtacggcatcttcaccctcgttatcgtcattgtcctgctcaacatg
ctgattgccatgatcacaaactcctttcagaagattgaggacgatgcagatgtggagtgg
aaatttgcccggtctaaactgtacctgagctacttcagagagggcctcaccatgcctgtg
cctttcaatatcatcccttctcccaaagctgtgttttacatcctgagggggttttttaaa
tgtctctgctgttgctgcaactttaactcggagcaaaaataccctcctgtagcctctatg
tctaacgacaaaggaacggaggacaacctgccttaccgacaacaggtgatcagagctctg
gtgcagcgctacatcgagtcagctcgcagggagtttgaggagaccaagaggaaagatatt
ggtaaccgaatcacggagctgaacaaggcggtctccaggatgcatcttgaaatgaaaggg
atccagcagcttctgatgactgatggacacgctgcaaacgacgcactgaccaaggacggt
tcttctgtgcttgggaaatacatcatcggtgccaagaataacttcagaggttttaacagc
agccaagatgacaaaagcacatcgcttaaagtgacagttcatcagaaagaggaaggggcc
gatgaaaggaaggccgattcagaggcgcggcaggacacagatacacaattggatcaggtg
gatgaaagtgaagaagaagaattgggtaaggcggcagactgcgaggtggtgaaaatggaa
gagggacgagcgaaaacagagcttggggattggaaagaaactgaaaatacagagcttgta
gaagtaagcaaaggtgatgatggcgtaaaagaggacttctcagaagggacgggttttatt
agagtagaagaaaaggtgaaagttgagagcatacagggcaaggaggataaaagggaagga
gatattgaccccaaggtgacggaaaatcttgcagagatcagacctgaacacatagagagc
agcaaaactagttttgaaacaacagatgcgaagaaaacgataaacaagttcaataacatg
gagttgaaagaaaaaccagacgaggcaggatggatgaagggaaaaaagtatgggggtaat
gttgtggaaagatctcacgtaaccaagggggacgagaaaaccggaaataagaaagtgatt
cagtctccaacagggagcagcagctccaacgacaccggctttggttcacaggaaggggaa
ggatcgattgacggcacaccagtaaaaccatga
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