Xiphophorus maculatus (southern platyfish): 102230809
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Entry
102230809 CDS
T02923
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102230809 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xma03041
]
102230809 (sf3b1)
03036 Chromosome and associated proteins [BR:
xma03036
]
102230809 (sf3b1)
Spliceosome [BR:
xma03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102230809 (sf3b1)
Complex B
102230809 (sf3b1)
Complex C
U2 SnRNP specific factors
102230809 (sf3b1)
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
102230809 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
102230809
NCBI-ProteinID:
XP_023193052
Ensembl:
ENSXMAG00000007369
LinkDB
All DBs
Position
7:3051679..3068145
Genome browser
AA seq
1315 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLQEENGEQGVGLVSTGFYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEDDTSTSLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKIADREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMMEQNLSKEEREIRLQLAEKAKS
GDLKAVNGSAASQAAAKRKRRWDQTADQTPSNSTPKKLSSWDQADAGTETPGHTPAHTPS
NSRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVR
KNRWDETPKTERETPGHGSGWAETPRTDRGEESVGETPTPGASKRKSRWDETPASQMGSS
TPLLTPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFP
EGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKP
DDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVALGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNVYVRYELEYVL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagatattgaggcccagatcctggagatccagggg
atgaaggccaccctgcaggaggagaatggcgagcagggtgtgggtctggtctccactggc
ttctatgaccaggagatctacggcggcagcgacagccgctttgctggatatgtcacttca
atcgcagccaatgagcaggaggacgacgatgaagacgacacgtccactagcctactgggg
cagaagaaacctggctaccacgcgccggtggcaatactcaactccatccctcagtcggat
gagcagtacgacccattcgcagaacatcggccgcagaagatcgccgatcgggaggacgag
tacaaagcccgccgcagacagatgatcatctcgcccgagcgtctcgacccttttgctgac
gggggcaaaacaccggaccctaagctgcaggtcaggtcgtatgtggacgtgatgatggaa
cagaacctgtccaaagaggagagggaaattcgtctgcagctggcagagaaggccaagtcg
ggggatctgaaagctgtcaatgggtctgctgcctctcaagctgctgccaaacgaaagcgc
cgctgggaccagacagctgaccaaactccgtccaactccacacccaaaaaactgtccagc
tgggaccaggcagacgccgggactgagactcctggacacactcctgcacacacaccttcc
aacagccgctgggacgaaactcccggccgcccgaagggcagtgagaccccaggggccaca
cccagcacccgtatgtgggaccccacccccagccacaccccagccggcgccgccacgcct
ggccgggatacaccaggccacgctacgcccggccacggcggcgccacggggagcgtccgc
aagaaccgctgggacgaaaccccaaagacggagcgcgagacgccaggacacggcagcggc
tgggccgagacgccgcgcacagacagaggggaggaatcggtgggggagaccccgacccca
ggagccagcaagaggaagtctcggtgggatgaaacgcccgccagccagatgggctcttcc
acacctcttctgacgcctggaaaaactccattaggaacgccagccatgaacatggccaca
cctacacccggacacctgatgagcatgaccccagagcagctccaggcctggaggtgggaa
cgggagattgatgagaggaaccgacctctgaccgatgaagagctggacgccatgttccca
gaaggatacaaggtgttacctcctccagcggggtacgtaccgatccgtaccccggcccgt
aagctgtcggccactcccaccccaatcggaggcatgacgggcttccacatgcaggccgag
gaccggaccaccaagcagatgaatgaccagccctcaggaaacctccccttcctcaaacct
gatgacattcagtactttgacaaactgctggtggaggtggatgaatcaactctgagcccc
gaggaacagaaggaaaggaagatcatgaagctgctgctgaagattaagaatggaactcct
cccatgagaaaggccgctctgcgccagataactgacaaagctcgcgagtttggagcaggt
ccgctcttcaaccagattctgccgcttctcatgtcccccaccctggaagaccaagagcgc
catctgctggtcaaagtcatcgaccgcatcctctacaaactggacgacctggtccggccg
tacgtacacaagatcctggtggtgattgagccgctgctgatcgatgaggactactacgcc
agagttgaaggcagagaaatcatctccaacttggcgaaggctgccgggttggccacgatg
atctctacgatgcgacccgatatcgacaacatggacgagtacgtcagaaacacgaccgct
cgagccttcgccgtggtggcctccgccctcggcattccctcgctcctccccttcctcaaa
gccgtgtgcaaaagcaagaagtcgtggcaggccagacacacgggcatcaagatcgtgcag
cagatcgccatcctgatgggctgcgccatcctgcctcacctgcgcagcttggtggagatc
attgaacacggtctggtggatgagcagcagaaggtgaggaccatcagcgctctggccata
gctgccctggccgaggccgccactccctacggaatcgagtcgtttgactctgtgctgaag
ccgctgtggaagggcatccggcagcacagaggaaagggtctggctgcgttcctcaaagct
atcggctacttgatccccctgatggacgccgaatacgccaactactacaccagggaggtg
atgctgattctcatcagagagttccagtctcctgatgaggagatgaagaagattgtgctg
aaggtggtgaagcagtgttgtggcacggatggtgtggaagcaaactacatcaaaactgag
atcctgcccccgttcttcaagcacttctggcagcacaggatggctctggacagacgcaac
tacagacagctggtggacaccactgtggagctggctaacaaagtgggagcagccgagatc
atttcccgcattgttgacgacctgaaagacgaggcagagcagtacaggaagatggtgatg
gagaccatcgagaagattatggggaacctgggagccgctgacattgaccacaagctggag
gagcagctgattgacggcatcctgtacgccttccaggagcagactacagaggattctgta
atgctgaatgggttcggtacagtggtgaacgccctggggaagcgtgtgaagccgtacctg
ccacagatctgcggtacggtgctatggcgtctgaacaacaagtcggccaaagtccgccag
caggcggctgacctcatttcccgcacggcagtggtgatgaaaacctgtcaggaggagaag
ctgatgggtcacttgggcgtggttctgtacgagtacctgggagaggagtaccccgaggtc
ctgggcagcatcctgggagcactgaaggccattgttaatgtcataggtatgcacaagatg
actccaccaatcaaagacctgcttcctcgtttgacgcccatcctgaagaaccggcatgag
aaggttcaagagaactgcatcgacctggtgggccggattgctgataggggtgctgagtac
gtgtcagccagagagtggatgaggatttgctttgagttgcttgagttactcaaagctcac
aaaaaggcaatccgcagagctaccgtcaacacgtttggttatattgccaaagccatcggg
cctcatgacgtgttggccactctgctgaacaacctgaaggtccaggagcgtcagaaccgc
gtgtgtacaaccgtggccatcgccatcgtggcggagacctgttcgccgttcacggtgctg
ccggcgctcatgaacgaatacagagtgcctgagctgaacgtgcagaacggcgtcctgaag
tcgctctcgttcctgttcgagtacatcggagaaatgggaaaagactacatctacgctgtc
acacctctactggaggacgcattaatggacagagatttggtccacagacagaccgccagc
gctgtcgtccagcacatgtccctgggtgtctacggttttggctgtgaagactcccttaac
catttactgaattatgtgtggcccaacgtttttgagacgtctccccacgtcatccaggct
gttatgggtgccctggaggggctaagagtggccctcggcccctgccgcatgctgcagtac
tgcttacagggtctgttccatccggcccggaaggtgagagacgtctactggaagatttac
aactccatctatattggttcccaggacgccctgattgctcattacccacaggtctacaac
gatgagaagaacgtctacgtccgctatgagctcgaatacgttttgtaa
DBGET
integrated database retrieval system
