Xiphophorus maculatus (southern platyfish): 102231063
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Entry
102231063 CDS
T02923
Symbol
smg5
Name
(RefSeq) protein SMG5
KO
K11125
protein SMG5
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102231063 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102231063 (smg5)
03032 DNA replication proteins [BR:
xma03032
]
102231063 (smg5)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
102231063 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
102231063 (smg5)
DNA replication proteins [BR:
xma03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
102231063 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
102231063
NCBI-ProteinID:
XP_005801879
Ensembl:
ENSXMAG00000013499
UniProt:
M4AGF3
LinkDB
All DBs
Position
3:11574035..11590854
Genome browser
AA seq
1113 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVESVHKLDVIIGSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSASSREMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVMPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSDT
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRVLVSFIYLQSLLQPKNS
LMETELTSLCQLVLEDFNLVLFYLPAPTHGGAPPCPSEEEEEQTQHSDSSYPVLPDNLIF
KMVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEDGESHVPALHTD
AADDLEMRDISAAEVDPSEERPLQNGSLEQEDEEDKDEDGRERVRVKKQSSEEDQHKAEE
EKQRQKKKYTRLSRLRRRRCAHKGGQGEDESDLSEGFESEEDEDDDEGGRVHADSTVGTP
IDEPLNPSSVKKETKRDGLGEEGSWESGSEEEEGGTAFDVETDSDMNSQESRSDLEDMED
TENSDSTEGQAREQQEEEEEQHKEEGGERDGEAPASTNGPLTQSDSSISSNLQAMSSQLF
QSKRCFRLAPTFSNMLLRPQVASGSTPTDTSAPPSQETPPPPGDSHCDLNPGTANGINDN
DLDSDSEESQHSAHSEKTLLEKLEILSNQGLMQVVKVFVDWLRTNTDIILMCAQSSQSLW
NRLSVLLNLLPDGSKLLEADLGLNSEVTEMLKECEQPGLSQTLLLPEDVALRHLPALSAA
HRRLDFSHRDASLSPLQECVLRVCCIRSFGHFLTNLQGNVLHFNPEAGIFTSISQSEQDN
LVQQAKAQFRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVPDAAA
LCHHLNLIRHLAGSGCFIIIIPRTVIDGLDRLKKENGGARDGIRFLESEFRKGNRYIRCQ
KESGRTFERDKLKRQDIEAWHLYKMVDSCRQLTVSQSNGDEDTAGMVTILTGHEVDELCA
RSAAMKSATQAVSSAGMELKNIVEFYRQWKEIG
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccgggtcaggacagcgagcccgaggcgaaagtccttcttatcaagcggctt
tacagggctgtggtggaatctgtgcacaagctggatgtcatcatcggcagcaagtcgtcc
tacagagaagtcttcaagccggagaacatcagcctgcggaacaagctgagagagctttgt
gtgaaattaatgtttctgcatcctgttgactacggccgtaaggccgaggagctgctctgg
aggaaggtttactatgaggtcatccaggttatcaagacgaacaagaagcacatccacagc
cgcagtgccctggagtgcgcctacagaacgcacctcatcgccggcgtgggtttctaccaa
catctgctgctctacatccaatcacattaccagctggagctgcaagactgcatcgattgg
acgcacgtcactgatcctctcatcggtcggaagaaacccgtgtcggcctcttctagagag
atggagtgggctcagatggcgtgtcatcgctgtctggtctacctcggagatctggcgcgg
tatcagaacgaactggctggagtggaagctgaacagctggcagagcgattttaccaccaa
gccttgtctgtcatgccccatgtcgggatgccttttaaccagctgggaacactggcagga
agcaagttctacaatgtggaagcaacctattactacctacgatgcatccaatcagatact
ccgtttgagggagcctacggcaacctgaagcgtctgttcgacaaagctgccaagatgtac
caccaagtgaagaaacaggaaatgaagaagctgtctccgtctcggcaaagatccaaagac
attaagcgtgtcctggtgagcttcatataccttcagagtctactgcagcctaaaaacagc
ttgatggagacggagctgacttcgctctgccagttggtgctggaggacttcaacctggtt
ctgttttatcttccggctccgacacacggaggagctccaccctgtccgagcgaggaagag
gaggagcagacgcagcacagcgacagttcctaccccgttctgcccgacaacctcatcttc
aagatggtggtcacatgcctcatggtcgtacacagccttaagagaggaggatctaagcag
tacagcgcatccatagcgtttacgctggctctgttctcccacctggtgaaccacgtgaac
atccggctgcaggctgaactggaggacggggagagccatgttcctgcgctgcacactgac
gctgcagatgaccttgaaatgagggatatctcagctgcagaagtagatccatcagaggag
aggccactgcagaacggctccctggagcaggaggatgaggaggataaagatgaagatggc
cgtgagcgagtccgagtcaaaaagcagagcagcgaagaagatcagcacaaggcagaggag
gagaagcaaagacagaagaagaagtacacccgcctttctcgactgcggcggcgccgctgc
gctcataaaggcggacaaggggaggacgaaagcgacctgagcgaaggattcgagagcgaa
gaagatgaggatgatgatgaaggagggagggtccatgctgattccacagttgggacgccg
atagatgaaccgctcaacccttcgtctgtgaagaaggagacgaagagggatggcctgggt
gaggaaggcagctgggagagtggttctgaggaagaggagggagggaccgctttcgacgtg
gagaccgactcggacatgaacagccaggagtctcgctcagacctggaggacatggaggac
acagaaaactcagacagcaccgagggtcaggcccgggagcagcaggaggaagaggaggag
cagcacaaggaggaaggtggggagcgggacggcgaggccccggccagcaccaacgggccc
ctcacgcagagcgactctagcatcagcagcaacctgcaggccatgtcctcccaactcttc
cagtccaaacgctgcttccgcctcgcacccaccttcagcaacatgctgctgaggcctcag
gtcgcctcaggctccacccccactgatacctctgccccgccctcccaggagacgccccct
ccgcctggagactcacactgcgacctgaaccccggtactgccaacggaatcaacgacaat
gacttggactcggactcggaggaaagtcagcacagcgcccacagtgaaaaaaccctgttg
gagaaactggagattttgtccaatcagggattgatgcaggtggtgaaggtctttgttgat
tggctcaggacgaacacggatatcatcctcatgtgtgcacagagttcgcagagcttgtgg
aaccgtctgtcggttctcttgaaccttcttccagatggcagcaagttgctggaggctgat
ttggggctgaactcggaggtgacagagatgttgaaggagtgcgaacagccgggtttgagc
cagactctgctgctgcctgaggatgtggcgctgcgccacctgcctgcgctcagcgccgct
caccgccgccttgatttcagtcaccgcgacgcctccctcagtcccctgcaggagtgtgtg
ttgcgagtgtgttgcattcgcagttttggccacttcctaacaaatctccaaggcaacgtg
ctgcacttcaacccagaggcgggaatctttaccagcatcagccagtcagagcaggacaat
ctggtgcagcaggctaaggcccagttcaggatggcggaagaggaggcccgtcggaatcgt
ttgatgagagacatggcccaacttcgactgcagttggaggtttcgcagctagagggcagc
cttcagcaacctaaagctcagtcgtccatgtctccctacctcgttcctgacgctgccgcc
ctctgccatcatctgaacctcatccgacacctggccggcagcggatgcttcatcatcatc
atcccaagaacagtgattgacggactggatcggctaaaaaaggaaaacggtggtgcaaga
gacgggatccgcttcctggagtcggaattccgcaaaggaaacaggtacatacgttgtcag
aaggagtcaggtcgcacttttgagagagataaactgaagcggcaggacatcgaagcttgg
catctgtataagatggtggacagctgccgacagctgacggtgtcccagagcaacggagac
gaagacacagccggcatggtgaccatcctgacaggacatgaagtggacgagctctgcgct
cggtctgccgccatgaagtcggcgacccaggctgtgtcgtccgcaggcatggagctgaag
aacatcgtggagttctaccgccagtggaaggagatcggctga
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