Xiphophorus maculatus (southern platyfish): 102231225
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Entry
102231225 CDS
T02923
Name
(RefSeq) endoribonuclease ZC3H12A
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102231225
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
102231225
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
RuvA_C
Motif
Other DBs
NCBI-GeneID:
102231225
NCBI-ProteinID:
XP_005796107
Ensembl:
ENSXMAG00000014646
UniProt:
M4AJM3
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All DBs
Position
3:6002256..6011058
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AA seq
624 aa
AA seq
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MDPVLPSDVFDSDLLETESEELRLKVDFFRKLGYSTAEVKAALRKLGLSTDTNAMLEELV
RNRTTNTSPCFSESDERSADLKDPLLPPSWDVGTCRIMPQLGEQKSADSELRPIVIDGSN
VAMSHSNKEVFSCRGIELAVDFFLDRGHNNITVFVPSWRKELPRADAPITDQHILLELEK
RKIVAFTPSRRVGGKRVVCYDDRFIVKLAHDLDGIIVSNDTYRDLQGEKPEWKKCIEERL
LMYSFVNDKFMPPDDPLGRHGPNLDNFLRKKPLPVEQKKLPCPYDKKCTYGIKCKYYHPE
RANHSYLSLADELREKAQISFVKEEKKARSSVNYPQSEPEPSHPRHTHLPWDQQISSVLG
HISENKLLLWENFRKSPNQMLSSTNGGKCQEEYPASHYIPNHHPNMSREYFDSGFGSTES
YYSDLPPSRSSTHRLGSQHQSTLPRLQHSPVHMENCNTSYCGKCCSYPQQQHHSNIDCCS
LPIYDTYNPNMFPHGVHQQRSLPAHFHNTATPQLHHNYWSDPFQGVPPARSSCPTPSLAY
PSHCHSSCCSYENHQYQTWGQQQQPPLPPAPAAFKQNRSETRKKLHAIFNPNQVDRVMEM
FPHLMDAEVLAAEILNMKAQGMIF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggacccggtacttcccagtgatgtttttgactcagatctgctggagacagaaagtgag
gaactccggcttaaagtggacttcttcagaaagctggggtactccacagcagaggtgaaa
gccgctctgagaaagctgggcctaagcacagacaccaacgcaatgctcgaggagcttgtg
agaaacagaaccaccaacacgtcaccctgtttttccgagagcgatgagaggagcgcagat
ctgaaagacccgctgctgcctcccagttgggacgttggaacctgcagaatcatgccacaa
ctcggggagcaaaaaagtgcagattcggagctgagacctattgttattgacggcagcaat
gttgctatgagtcacagcaacaaggaagtgttctcatgcaggggcatagagttggcagtg
gatttcttcctggacagaggtcataataacatcactgtgtttgttccgtcttggcgcaaa
gagttgccccgagctgatgcccctataacagatcaacatattctgttggagcttgaaaaa
cggaaaatagtggccttcaccccttcccgccgggttggtggcaagcgagtggtttgttat
gatgaccgcttcattgtcaaactggcgcatgatttagatggcataattgtgtccaacgac
acctaccgtgatcttcaaggagaaaaacctgagtggaagaaatgcattgaggagaggctc
ctcatgtactcatttgtgaatgacaagttcatgcctccagatgatcctttaggtcgacat
ggacctaacctcgacaattttctccggaaaaagcccctgcctgttgagcagaaaaaactg
ccctgtccatatgataaaaagtgcacttatggcatcaagtgcaagtactaccatcctgag
cgggcaaaccactcctatctgtccttggctgatgaactgagagagaaagcacaaatttct
tttgtaaaagaagaaaaaaaggcaagatcatctgtcaactatcctcaatctgaacctgag
ccttctcatcctcgacacacacatctcccttgggatcagcagatttcctcagttcttggt
cacattagtgaaaataaactactgctctgggaaaacttcagaaaaagccccaaccaaatg
ctgtcttcaacaaatggaggaaagtgtcaagaagaatatcccgcgtcacactacataccg
aatcatcatcccaatatgtctcgggaatattttgattccggttttggttcgactgagagc
tactactccgacttgccaccatcccgcagcagcacccacagacttggttctcagcatcaa
agcaccctccccaggctccaacattccccagttcacatggagaactgtaataccagttat
tgtggcaaatgctgttcctatcctcagcagcagcatcacagcaacatcgactgctgcagt
ctacccatctatgacacctacaatccaaatatgttcccacatggtgtacatcagcaacgg
agcctgcctgcccatttccataacactgcaaccccccaactccatcataattactggtca
gatccctttcagggtgtgccgccagccagatcctcatgccccaccccctccttggcttat
ccttcacattgccacagctcctgttgctcctatgagaatcaccagtaccaaacctggggc
cagcaacaacaaccgccgctgcctccggctcctgctgcattcaagcaaaatagatcagaa
acgcgcaagaaactgcatgccatcttcaacccaaaccaagtggatagggtcatggagatg
ttcccgcacctgatggatgctgaagttttggctgcagagatactgaacatgaaagctcag
gggatgatattctga
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