Xiphophorus maculatus (southern platyfish): 102231240
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Entry
102231240 CDS
T02923
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102231240 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102231240 (bard1)
04121 Ubiquitin system [BR:
xma04121
]
102231240 (bard1)
03036 Chromosome and associated proteins [BR:
xma03036
]
102231240 (bard1)
03400 DNA repair and recombination proteins [BR:
xma03400
]
102231240 (bard1)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
102231240 (bard1)
Ubiquitin system [BR:
xma04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
102231240 (bard1)
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
102231240 (bard1)
DNA repair and recombination proteins [BR:
xma03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
102231240 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_5
Ank_3
Ank_4
BRCT_2
BRCT
zf-RING_5
zf-RING_10
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
102231240
NCBI-ProteinID:
XP_005800794
Ensembl:
ENSXMAG00000015997
UniProt:
A0A3B5RCX0
LinkDB
All DBs
Position
7:20020616..20046001
Genome browser
AA seq
800 aa
AA seq
DB search
MDNTTPLQTDGWKNTKEAVANFRRLLLCSKCSNLMEEPVCLGMCEHMLCRSCAGPWAGDG
CAVCLSPAWVKDIQINRQLSSIIQLFSDLESLLNPTEQPDSSVAEVSSQAEAAVLKCKKN
FKIWFSPRSRKVRCKVEKPLEITAPDRKSFEEQPAAQSKVPTAQCQDLSVFNFTSSSQDS
SSSQNESNVNSKGKKRSKKTATTRKVQGHTSATRRQTKENLKKKKLEAINQQWGITGNQN
PSSGPEPSCAVGARGSRKRVSFLSSSVSTDEAQADASQVCELSLTNRTINVSLLGGEINV
LSHQSQHGQSTSSQMSSTNNPNLDDNSKKETNTSPQESLSKRSKTVARNCSLETTPKRQR
ASSGQRRKSPGGKASPFTERLTLASPTSEKKKKHPREGKQHSPTVVALISSESHNKSMCS
PRSSFGRSSPGSPAIRKRNHRGETPLHLAAIKGDVDSVKELLDQGADPNLKDNAGWTPLH
EACNLGHLAAVKVLVARGALLNTPGYENDSPLHDAVRNGHAAIVKLLLQLGASQNVLNLH
GKRPADYAVSQEMLAIFQEAAEGIQYANSHTSHSPSATISASSESARRDQTLMLLASKLS
SREQRQLVKLGVLLRGRIVDTFSDSVSHVVVPEGQMPTTYSTLLGLLAGCWVVKYSWVKA
CLQAGKWLPEAEHEAGEGPQRSRINRCSLLPPLFDGCFFFLLGSFKGTTKDELAKLLQEG
GGQLLRRQPKPDSDVTQTLNAAAYHAEPGSDQALCTQYIIYNPQGTYKPAVVRRGKVWSA
PSTWIIDCIAAFSLLPVPQH
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggataacaccacaccgctacaaacagatggctggaagaacacaaaagaggcggttgca
aactttcgtcgactgttgctttgctccaaatgctcaaatttgatggaggagccagtgtgt
ctggggatgtgcgagcatatgctgtgcaggtcttgtgctggcccttgggcaggagacggc
tgcgcggtgtgtctcagccctgcgtgggtgaaggacattcaaatcaacaggcagcttagc
agcatcatacagctcttcagtgacttggagtccctgcttaatcccacagaacaaccagac
tcctctgttgctgaggtcagttcgcaggcggaggctgcagttctaaaatgcaagaagaac
tttaagatctggttcagtcctcgcagtcgaaaggtgcgctgcaaggtggagaagccttta
gagatcactgctccagacaggaagtcgtttgaagaacagcctgctgctcagtccaaagtc
cccacagctcagtgccaggacctttcagtgtttaatttcacttcgtcctcccaagactct
tcatcttcacaaaatgaaagtaatgtaaacagtaaaggaaagaaaagatctaagaaaact
gctactacaaggaaggttcaagggcacaccagtgccacacgtagacagactaaagagaat
ttgaaaaagaagaagctggaggccataaaccagcagtggggaattacaggcaaccaaaat
ccctcatctggaccagagccatcctgtgctgttggagcaagagggtcccgcaaaagggtt
tctttcttaagctcttctgtttcgactgatgaggcccaggctgacgcctcgcaggtctgt
gaactcagtttgaccaaccgcacaataaacgtaagtctcttgggaggggagatcaatgtg
ctgagtcaccaaagccagcatggtcagagcacatccagtcagatgtcgtcaacaaataac
ccaaatctggatgacaattccaaaaaagagacaaacacgtctccccaggagagtctctcc
aaaagaagcaaaacagtggcgagaaactgctccttggaaaccacgccaaaaagacagagg
gcttcttcaggccaaaggagaaaatcacctggtggaaaagcttcacctttcactgagcgt
ttaactttagcaagccccacaagtgaaaagaaaaagaaacacccgagagaaggtaaacag
catagtccgactgtagtagccctcatttcttcagaaagccacaataaatccatgtgcagt
cctcggtcgtctttcggccgttcaagccctggaagccctgcaataaggaagaggaaccac
agaggagagacccctctacatcttgctgcaataaagggagatgtagattctgtcaaagaa
cttctggatcagggagctgaccccaacctgaaagataacgccggctggacaccactgcat
gaggcatgtaatctgggccacctggcagctgtgaaggttttggtcgcaaggggagccctg
ttgaacacacctggctatgaaaatgattctccactccatgatgctgtgaggaatggacat
gcagccattgttaagctgctgctgcagctcggtgcctcacagaacgttcttaatctacat
ggaaagcgtcctgcagattatgcagtgagccaggagatgctggcgattttccaggaagct
gcagaaggaatccaatatgctaattctcatacatctcatagcccctcagccactatctct
gcgtcgagcgagagtgcgagaagggatcagactttaatgttattggccagcaagctatca
tcacgagagcagcgtcagctagtcaaactgggagtgttactgagaggaaggatcgttgat
accttttctgactcagtgagccatgtcgtcgtgccagaaggacaaatgcccaccacctac
tccaccctcctgggtcttcttgctggctgctgggttgtcaaatacagctgggtgaaagca
tgtctgcaggcgggaaagtggctacctgaagctgagcatgaagcgggagaaggccctcag
cgcagccgcatcaacagatgtagtttgcttccaccacttttcgatggctgtttcttcttc
ctcctcggctcctttaaggggacaaccaaagacgagctcgccaagctgttgcaagaagga
ggcggccaacttctgaggcggcagccaaagcctgacagcgacgttacacagactctgaat
gcagcagcctaccatgcagagccaggctctgaccaggcactctgcacccagtacatcatc
tacaacccacagggaacctacaagccggcggttgtcagacgagggaaagtgtggtccgct
ccctcaacctggatcatcgactgcattgcagccttcagcctcctccctgtgcctcagcat
taa
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