KEGG   Xiphophorus maculatus (southern platyfish): 102231240
Entry
102231240         CDS       T02923                                 
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
  KO
K10683  BRCA1-associated RING domain protein 1
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    102231240 (bard1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xma03019]
    102231240 (bard1)
   04121 Ubiquitin system [BR:xma04121]
    102231240 (bard1)
   03036 Chromosome and associated proteins [BR:xma03036]
    102231240 (bard1)
   03400 DNA repair and recombination proteins [BR:xma03400]
    102231240 (bard1)
Messenger RNA biogenesis [BR:xma03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     102231240 (bard1)
Ubiquitin system [BR:xma04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    102231240 (bard1)
Chromosome and associated proteins [BR:xma03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     102231240 (bard1)
DNA repair and recombination proteins [BR:xma03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     102231240 (bard1)
SSDB
Motif
Pfam: Ank Ank_2 zf-RING_6 Ank_5 Ank_3 Ank_4 BRCT_2 BRCT zf-RING_5 zf-RING_10 zf-C3HC4_3 zf-RING_UBOX zf-C3HC4_4 zf-C3HC4
Other DBs
NCBI-GeneID: 102231240
NCBI-ProteinID: XP_005800794
Ensembl: ENSXMAG00000015997
UniProt: A0A3B5RCX0
LinkDB
Position
7:20020616..20046001
AA seq 800 aa
MDNTTPLQTDGWKNTKEAVANFRRLLLCSKCSNLMEEPVCLGMCEHMLCRSCAGPWAGDG
CAVCLSPAWVKDIQINRQLSSIIQLFSDLESLLNPTEQPDSSVAEVSSQAEAAVLKCKKN
FKIWFSPRSRKVRCKVEKPLEITAPDRKSFEEQPAAQSKVPTAQCQDLSVFNFTSSSQDS
SSSQNESNVNSKGKKRSKKTATTRKVQGHTSATRRQTKENLKKKKLEAINQQWGITGNQN
PSSGPEPSCAVGARGSRKRVSFLSSSVSTDEAQADASQVCELSLTNRTINVSLLGGEINV
LSHQSQHGQSTSSQMSSTNNPNLDDNSKKETNTSPQESLSKRSKTVARNCSLETTPKRQR
ASSGQRRKSPGGKASPFTERLTLASPTSEKKKKHPREGKQHSPTVVALISSESHNKSMCS
PRSSFGRSSPGSPAIRKRNHRGETPLHLAAIKGDVDSVKELLDQGADPNLKDNAGWTPLH
EACNLGHLAAVKVLVARGALLNTPGYENDSPLHDAVRNGHAAIVKLLLQLGASQNVLNLH
GKRPADYAVSQEMLAIFQEAAEGIQYANSHTSHSPSATISASSESARRDQTLMLLASKLS
SREQRQLVKLGVLLRGRIVDTFSDSVSHVVVPEGQMPTTYSTLLGLLAGCWVVKYSWVKA
CLQAGKWLPEAEHEAGEGPQRSRINRCSLLPPLFDGCFFFLLGSFKGTTKDELAKLLQEG
GGQLLRRQPKPDSDVTQTLNAAAYHAEPGSDQALCTQYIIYNPQGTYKPAVVRRGKVWSA
PSTWIIDCIAAFSLLPVPQH
NT seq 2403 nt   +upstreamnt  +downstreamnt
atggataacaccacaccgctacaaacagatggctggaagaacacaaaagaggcggttgca
aactttcgtcgactgttgctttgctccaaatgctcaaatttgatggaggagccagtgtgt
ctggggatgtgcgagcatatgctgtgcaggtcttgtgctggcccttgggcaggagacggc
tgcgcggtgtgtctcagccctgcgtgggtgaaggacattcaaatcaacaggcagcttagc
agcatcatacagctcttcagtgacttggagtccctgcttaatcccacagaacaaccagac
tcctctgttgctgaggtcagttcgcaggcggaggctgcagttctaaaatgcaagaagaac
tttaagatctggttcagtcctcgcagtcgaaaggtgcgctgcaaggtggagaagccttta
gagatcactgctccagacaggaagtcgtttgaagaacagcctgctgctcagtccaaagtc
cccacagctcagtgccaggacctttcagtgtttaatttcacttcgtcctcccaagactct
tcatcttcacaaaatgaaagtaatgtaaacagtaaaggaaagaaaagatctaagaaaact
gctactacaaggaaggttcaagggcacaccagtgccacacgtagacagactaaagagaat
ttgaaaaagaagaagctggaggccataaaccagcagtggggaattacaggcaaccaaaat
ccctcatctggaccagagccatcctgtgctgttggagcaagagggtcccgcaaaagggtt
tctttcttaagctcttctgtttcgactgatgaggcccaggctgacgcctcgcaggtctgt
gaactcagtttgaccaaccgcacaataaacgtaagtctcttgggaggggagatcaatgtg
ctgagtcaccaaagccagcatggtcagagcacatccagtcagatgtcgtcaacaaataac
ccaaatctggatgacaattccaaaaaagagacaaacacgtctccccaggagagtctctcc
aaaagaagcaaaacagtggcgagaaactgctccttggaaaccacgccaaaaagacagagg
gcttcttcaggccaaaggagaaaatcacctggtggaaaagcttcacctttcactgagcgt
ttaactttagcaagccccacaagtgaaaagaaaaagaaacacccgagagaaggtaaacag
catagtccgactgtagtagccctcatttcttcagaaagccacaataaatccatgtgcagt
cctcggtcgtctttcggccgttcaagccctggaagccctgcaataaggaagaggaaccac
agaggagagacccctctacatcttgctgcaataaagggagatgtagattctgtcaaagaa
cttctggatcagggagctgaccccaacctgaaagataacgccggctggacaccactgcat
gaggcatgtaatctgggccacctggcagctgtgaaggttttggtcgcaaggggagccctg
ttgaacacacctggctatgaaaatgattctccactccatgatgctgtgaggaatggacat
gcagccattgttaagctgctgctgcagctcggtgcctcacagaacgttcttaatctacat
ggaaagcgtcctgcagattatgcagtgagccaggagatgctggcgattttccaggaagct
gcagaaggaatccaatatgctaattctcatacatctcatagcccctcagccactatctct
gcgtcgagcgagagtgcgagaagggatcagactttaatgttattggccagcaagctatca
tcacgagagcagcgtcagctagtcaaactgggagtgttactgagaggaaggatcgttgat
accttttctgactcagtgagccatgtcgtcgtgccagaaggacaaatgcccaccacctac
tccaccctcctgggtcttcttgctggctgctgggttgtcaaatacagctgggtgaaagca
tgtctgcaggcgggaaagtggctacctgaagctgagcatgaagcgggagaaggccctcag
cgcagccgcatcaacagatgtagtttgcttccaccacttttcgatggctgtttcttcttc
ctcctcggctcctttaaggggacaaccaaagacgagctcgccaagctgttgcaagaagga
ggcggccaacttctgaggcggcagccaaagcctgacagcgacgttacacagactctgaat
gcagcagcctaccatgcagagccaggctctgaccaggcactctgcacccagtacatcatc
tacaacccacagggaacctacaagccggcggttgtcagacgagggaaagtgtggtccgct
ccctcaacctggatcatcgactgcattgcagccttcagcctcctccctgtgcctcagcat
taa

DBGET integrated database retrieval system