Xiphophorus maculatus (southern platyfish): 102231980
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Entry
102231980 CDS
T02923
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
102231980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102231980
03041 Spliceosome [BR:
xma03041
]
102231980
03036 Chromosome and associated proteins [BR:
xma03036
]
102231980
Enzymes [BR:
xma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102231980
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102231980
mRNA cycle factors
Common to processing body (P body) and stress granule
102231980
Spliceosome [BR:
xma03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102231980
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
102231980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-GeneID:
102231980
NCBI-ProteinID:
XP_005813150
Ensembl:
ENSXMAG00000002739
UniProt:
M3ZKL0
LinkDB
All DBs
Position
24:complement(5358730..5373730)
Genome browser
AA seq
730 aa
AA seq
DB search
MSHVAVENAHGLEQQLAVLDLSAPDGQVGGRYVPPHLRNKDASKNVGNAFAAGRPGGYTI
APAANYGWDAGRNNFVNGYHDNRMSGNSFNRGPPRMERGRGGVAGGGYRGNRGGAFNPIN
PAQPISFDASGWNTAKDAYSSFGNNRGKSAFFNDRGNASRGRFDHGGFGGGGGGNSRWVE
ESRDDGDWSKPLPRNERLEHELFSGSNTGINFEKYDDIPVEATGQNSPHHIESFQDVDMG
EIIMGNIALSRYTRPTPVQKYAIPIVKSKRDLMACAQTGSGKTAAFLLPILSQIYTDGPG
EALNAAKASGQENGKYGRRKQYPIALVLAPTRELALQIYDEARKFSYRSRVRPCVVYGGA
DIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRI
VEQDTMPHKGIRQTLMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEE
SDKRSFLLDLLSATVIPNEVQDNTGDNVEKPGKDSLTLVFVETKKGADALEDFLYREGYA
CTSIHGDRSQRDREEALNQFRSGKCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH
RIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQHKSSNRGR
SKRFSGGFGARDYRQTAAGGSAGGFGGRGGRNQQGHGGNRGFGGGGFGNFYTSDGYGGNY
SHSQVDWWGN
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgcccacggtctagagcagcagcttgctgtcctagac
ttgagtgctccagatggacaagtcggagggcgatacgttcctccacatttacggaacaaa
gacgcatccaagaacgtgggaaatgcttttgctgctggacgaccgggcgggtacaccata
gcgcctgcagcgaactacggttgggacgcagggcgcaacaactttgtcaacggctaccat
gacaaccgcatgagcggcaactcgttcaaccgtggcccgccacgcatggagcgtgggcga
ggcggtgttgcgggaggcggttaccgtggcaacaggggtggagcgttcaatcccattaac
cccgcgcaacccataagcttcgatgccagtggctggaacacggccaaagacgcctatagc
agctttggcaacaaccgaggaaagtctgcgttcttcaacgacagaggcaacgccagcaga
ggaaggttcgatcacggtggattcggtggtggcggaggaggaaacagccgctgggtggag
gagtccagggacgatggcgactggtccaagccgctgccgcgtaacgaacggctggaacat
gagctgttctccggcagcaacaccgggatcaactttgagaaatacgacgacattcccgtt
gaggctacaggacaaaacagccctcatcacatcgagagtttccaagatgtcgacatgggt
gagattatcatgggcaacattgctctgagccgctacaccagaccaactcctgtgcagaaa
tacgccattcctatcgtgaaatccaagagagacctcatggcctgcgcacagacgggatct
ggaaagacggctgcattcctgcttccaattctcagccagatctacacagatggaccagga
gaagctctgaatgcagccaaagcctcagggcaggaaaatggaaagtatggccggcgtaag
cagtaccccattgccctggtactggccccaaccagagaactggcgctgcagatctatgac
gaagccaggaagttttcataccgctccagagtgcgtccctgtgtggtgtacggcggggca
gacattggccagcagattagagacctggagagaggctgccacctgctggtagcaactcct
ggtagactggtggacatgatggagagaggcaagattggactggactactgcaactacttg
gtgctagatgaggcagaccgcatgctggacatgggctttgaaccacagataagacgcatc
gtggagcaggacaccatgccgcacaaaggcatcagacaaaccttgatgttcagcgctacg
tttcctaaagagatccagatcctggcgagggattttctggaggattacatcttcctggca
gtgggcagagtgggttccacctcggagaacatcacacagaaggtggtgtgggttgaagag
agcgataagagatctttcctcttggatcttctcagtgctacagtcatccccaacgaagta
caggacaatactggagacaacgtagagaaacctggtaaggactctctgaccctcgtcttt
gtggagaccaagaaaggagccgacgccttggaagacttcctgtaccgggagggctacgcc
tgcaccagtatccatggcgaccgctcccagagagaccgcgaggaggcactgaaccagttc
agatcgggaaagtgccccatccttgtcgccacggcggttgcagctcgaggtctggacatc
tccaacgtgaaacatgttattaacttcgacctgccaagcgacatagaggagtacgtccat
cgcatcggacgtacggggcgagtcggaaacctggggctggccacgtcattcttcaacgac
aaaaacgggaacatcacaaaggacctgctggatatcctggtagaggctaaacaggaggtt
ccgtcatggctggagagcctggcctatgaacaccagcacaagagtagcaacagggggcgc
tctaagaggttctctggtggtttcggagctcgggattaccgccagacggctgccgggggc
agcgccggagggttcgggggccggggaggacgcaaccagcagggacatggaggaaaccgt
ggcttcggaggaggtggttttggcaacttctacacaagcgacggctacggaggcaattac
tcccactctcaagtggattggtggggaaactag
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integrated database retrieval system
