Xiphophorus maculatus (southern platyfish): 102232109
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Entry
102232109 CDS
T02923
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xma00535
]
102232109
Proteoglycans [BR:
xma00535
]
Extracellular matrix (ECM) proteoglycans
Others
102232109
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Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Fn3_VIN3
Pur_ac_phosph_N
Fn3_PBP1
Fn3_ROS1
VWA_3
Fn3_Dep-1_3rd
Fn3_nematode
Pga1
Motif
Other DBs
NCBI-GeneID:
102232109
NCBI-ProteinID:
XP_023201274
Ensembl:
ENSXMAG00000001458
LinkDB
All DBs
Position
13:complement(10274811..10414532)
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AA seq
1870 aa
AA seq
DB search
MQFSVRLSYFLLGFVFIAVLPHTAKGQVSSPRRFRVKVLGQDKLEVSWKEPKGDFEGYKV
IYITRPGGQQKVLELAKQETKLIIKDYNPSKDYNFKISAVNGGKESKPLLGKQEAQPSGP
ETAQTQGTKKSDVTRENNEISEAEDGFMCKTPAIADIVILVDGSWSIGRINFRLVRAFLE
NLVNAFSVEFDKTRIGLAQYSGDPRIEWHLNAHTTKEAVIEAVKNLPYKGGNTLTGLALT
FILENSFKVESGSRPGVPKIGILITDGKSQDDVIPPAQSLKDAGIELFAIGVKNADENEL
KAIASPPEETHVYNVADFSVMSDIVEGLTKTVCDRVEQLDKKIKGGGEPAPPVTSIAPPR
NLVTSDITARSFRVTWTHAPGLVEKYRVVYYPASGGQPEEKVVVGTENSVELTYLNSLTE
YQVAVFAVYRSSASEALRGSATTLALPTVNNLELFDITHSTMRVRWKIAAGASGYMILYA
PLTEQEAADEKEVKVGDSVNEVELEGLTPATEYTVTVYAIYGEEASDPMTSQQTTLPLIP
ASNLRFQDVDHSSVRITWDSPSKLVRGYRIMYVKTSGVQTTEVDLGAVTSYLLKNLTSLT
EYTVGVFAVYKEGEAPAVTESFTTKMVPDPMDLKSSDISSDGFRLSWQHAASDVVLYRLT
LTPTDGGESEEVLVNGNINTYLAKGLEPASEYEVLLAAIYANQEESDEVVLIETTAKRTT
TVATTTTTTLTPRYAVKNLKIDEETTFSMRVSWQAVDSRNVRHYQLTYISARGDRAQEMR
TVPSGQTSLVLQPLLSDTEYKVTVIPVYNEGDGPVSSQMGRTLPLSAPRNLRVSEEWYSR
FRVSWDVPPSPTMGYRVVYQPLSAPGQALETFVGEDVNTMLILNLLSGTEYSVKVIASYT
TGSSEALTGKAKTLYLGVTSLSTYQVRMSGVCAQWVPHRHASTYRLVIQSVTGSQKQETK
LGGGASRHCFSSLKPNTEYKISIYSQLQDGTEGPAVTANVKTLPIPTLAPAKPPTTSPPP
TIPPAKEVCKAAKADLVFLVDGSWSIGDDNFLKIIRFLYSTVGALDRIGPDGTQVAIAQF
SDDARTEFKLNSYGDKERLLDAINKISYKGGNTKTGRAIQHVKENIFTAEGGARRGIPNV
LVVLTDGRSQDDVNKVSKEMQMSGYIVFAIGFADADYGELVSIASKPSDRHVFFVDDLDA
FQRIEEKLVTFVCEAATATCPSIPMSGSTTPGFRMMELFGLVENKYNSISGVSMVPGTFN
AFPCFHLHSNALMAQPTRFIHPEGLPSDYTITLLFRVLPDTPEEPFAIWEILNKNNDPLT
GVILDNGGKTLTFFNNDFRGDFQTVTFEDPEIKKLFFGSFHKLHIAISKTSAKVFIDCKM
VAEKFINAAGNITTDGVEVLGRMVRSRENKDNSAPFQLQNFDIICSTSWANRDKCCELPG
LRKEVDCPALPKACTCTQDSKGPAGPPGVPGGPGIRGARGDRGEPGPVGPAGPVGDTGVP
GPQGPPGPQGPSGRSIIGPPGSAGERGQKGEAGQQGQQGIPGRPGPVGREGPPGPRGLPG
KDGPQGRQGPPGTMGTPGAPGSPGNTGAQGKQGTLGPPGPPGTKGEKGERGDLQSTASVQ
AIARQVCEQLIQSHMSRYNTILNQAPSPPVSIRTVPGPPGEPGREGAPGPQGEQGPPGRP
GFPGQNGQNGNPGERGQPGEKGEKGSAGVGVQGPRGPPGPPGPQGLGRPGSQGPTGRPGN
PGTSGRPGVPGPVGPPGPPGYCDQNSCLGYNVGEVEEITDVRGIPPVQLPSSVFQNYGEA
EEDDPYRYYQPNYPAPQPVSPDDPALALDDVELRSPGVYRSKRSTKAEEVQAGTKRRIKR
GVKNLPKLTN
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctcagtcagactgagctacttcctgctgggctttgttttcatcgcagtgttg
cctcacacagcaaaaggccaagtttcatcaccacggagatttcgtgtaaaagtcctggga
caggacaagcttgaggtatcatggaaggagccgaaaggagattttgaaggatacaaggtt
atttacatcacacgtccaggtggacaacagaaggtgcttgaactagcaaagcaggagaca
aagctgatcattaaagattataacccctcaaaagattacaactttaagatcagtgctgtg
aatggcgggaaggagagcaaacctcttctaggaaaacaagaagctcagccatcaggcccc
gaaacagctcaaacacaggggactaaaaagagtgatgtcacacgagaaaacaacgagatc
tcggaagctgaagatggattcatgtgcaagactcctgccatagccgacattgtgattctg
gtggatggctcttggagtattggtcggattaactttaggctggttcgagcattcctagaa
aaccttgtcaatgccttttctgtagaatttgacaaaacaagaattggacttgctcagtac
agtggagaccccaggattgagtggcatctgaatgctcacactaccaaagaggctgtgata
gaggctgtgaaaaacttgccctataaaggaggaaacacactgacaggtctggctctcacc
tttatactggaaaacagcttcaaagtagaatctgggtcccggcctggtgttccaaaaata
ggaatcctcatcactgatgggaagtcccaagacgatgtgattcctcctgcccaaagcctg
aaggatgctgggatagaactgtttgctattggtgtgaaaaacgcagatgaaaatgagctg
aaggccattgcgtctcctcctgaggagactcacgtctataatgtggcagacttcagtgtg
atgagtgacatcgtggaaggtctcaccaagacagtctgtgaccgtgtggaacagcttgac
aaaaaaataaaaggaggaggagagccagctccacccgtcacctctattgcaccccctcgt
aatctcgtgacatcagacataacagctcgtagttttcgggttacatggacgcatgcgccg
ggcctagtggagaaatatcgagtggtgtactatccagccagtggaggacaaccagaagaa
aaagtggttgtggggacagagaacagcgtggagctgacctatctgaactccctcactgag
taccaggtggccgtttttgccgtctaccgaagttctgccagcgaggccctgagaggaagt
gccaccacattggcactgcccacagtgaacaacctagagttattcgatatcactcacagc
accatgagggtccgctggaagatcgccgcgggggcttcggggtacatgatcctctacgcc
ccgctgactgagcaagaagctgcagatgagaaggaggtgaaagtgggtgattctgtaaat
gaggtggagctggaaggattaactccagccactgaatacactgtaacagtttatgccata
tatggagaggaggccagtgatcccatgaccagccagcagaccacattaccactcatccca
gcaagtaacctacgtttccaagatgtggaccacagctcagttcgcataacttgggattcc
ccttccaagttggtgcgaggctaccgtatcatgtacgtcaagaccagcggagtccaaact
actgaggtggaccttggtgctgtgacgagttatttgctcaaaaacctgacctccctgacg
gagtacaccgtcggggtctttgctgtctacaaagaaggagaagctccagcagtgaccgaa
agcttcaccacaaagatggttccagacccgatggatctgaaaagcagtgatatctcctca
gatggtttcaggctgtcatggcaacacgccgcctctgatgtggtgctgtatcgactcacc
ttgacacccaccgatgggggagagagcgaggaggttctggtgaatggaaacattaacacc
tatctggctaaaggactagaacccgcctccgaatatgaagtcctcctggctgctatctac
gcaaaccaagaggagagtgatgaggtggtgctaatagaaaccactgctaagaggacaact
acagttgctacaacaaccacaacaacattaacacctcgttatgctgtgaagaacctgaag
atcgatgaagaaaccacatttagcatgcgggtgtcgtggcaggctgtggactccagaaat
gtccgtcattatcaactgacctacatcagtgccaggggagacagagcacaggagatgagg
acggtgccctcaggtcaaaccagcctggttctgcagcctctcctttcagacacagagtac
aaagtcactgtgattcctgtttacaatgagggagatggcccggtatcctcacaaatgggt
cggacacttcctctttcagctcctaggaacctgcgtgtgtcagaagaatggtacagccgc
ttcagggtcagctgggacgttcctccttcgcccactatgggctacagagttgtctaccag
cctctttctgcccctggacaggcattagagacttttgttggagaggatgtgaacaccatg
ctgatcctcaacctcttgagtgggacagagtacagtgtcaaggtcatcgcgtcctacacc
acaggatccagcgaggctctaacaggaaaggccaagactttgtatcttggagtaaccagt
ttgagcacatatcaagtgaggatgtctggtgtttgtgctcagtgggtgcctcaccggcat
gccagtacctacagactggttattcaatctgtgactggtagtcagaagcaggagaccaag
ctcggtggaggagccagcagacactgtttcagcagcctgaagcccaatacagagtataag
atcagcatatactctcagctgcaggacgggactgaaggaccagctgtcactgcaaatgtg
aagacattaccgatcccaacactagcaccggccaagccccctaccaccagtccaccaccc
acaatccctcctgctaaggaagtttgtaaggcagccaaagcagacctggtctttttagtt
gatggttcctggagtatcggtgacgacaacttcctgaagattatccgtttcctgtacagc
accgtcggagctctggatcggataggcccagatggcacacaggtggccatcgcccagttc
agtgacgacgctcggactgagttcaagctgaactcctacggtgacaaagagcgtctgctt
gatgccatcaacaagatctcctacaaaggaggaaacactaaaacaggtcgagccatccag
catgtgaaggaaaacatctttaccgctgagggaggagccaggagaggaatccctaacgtc
cttgtagttctgactgatggccgatcccaggatgacgtcaataaagtttccaaagagatg
cagatgtcaggttacattgtgttcgctatcggcttcgctgatgccgactatggagagttg
gtgagcatcgccagtaaaccgagcgacaggcacgtcttcttcgtggacgacctggacgcc
tttcagaggattgaagagaagctggtgacctttgtgtgcgaggccgctactgcgacttgt
ccatcaataccaatgagtggcagcacaaccccaggattccgtatgatggagctgtttgga
cttgttgaaaataagtacaacagcatctctggtgtttccatggtacctggcaccttcaat
gcctttccctgtttccacctgcacagcaacgctctgatggcccagccaaccaggtttatc
catcctgaggggcttccctctgactacaccatcaccctgctgttcagagtgctgcctgac
acgccggaggagccctttgctatctgggagatcctcaataagaacaacgatccacttaca
ggagtcatcctggacaatggaggaaaaactctgacattcttcaacaacgacttcagggga
gattttcagactgtcacatttgaagatccagaaattaaaaaactcttcttcggaagcttt
cacaagctgcacattgcaatcagcaagacgagtgccaaagtgttcatcgactgcaaaatg
gtggcagagaagttcatcaacgcagcaggaaacatcaccacagatggagtggaagttctg
ggcaggatggttcgttcccgagagaacaaggacaactctgcaccgttccagctccagaac
tttgacattatttgcagcacatcctgggccaacagagacaagtgctgtgaactgcctggt
ctgaggaaggaggtagactgtccagctttacccaaagcctgcacctgcacacaggacagc
aaaggtccagctggtcctcccggagtgcctggcggtcctggaatcagaggggccagaggt
gatcgtggagagcccggtcctgtgggacccgcaggtcctgttggagatacaggtgtaccc
ggacctcaaggaccccctggaccacagggaccaagtggccgctccatcattggaccccct
ggttctgcaggagagagggggcagaaaggtgaagctggccaacagggacaacagggtata
cctggaagacctggccctgtgggaagagaaggacctccaggacccaggggacttccaggt
aaagacggcccacagggcagacagggacccccgggaactatggggactccaggagctcct
gggtctcctggaaataccggtgcccaaggaaaacagggaaccctgggaccaccgggtcca
ccaggaacaaagggagagaaaggtgaacggggtgaccttcagtcaacggcatcagttcag
gccattgccagacaagtctgtgagcagctgatccaaagtcacatgtcacgctacaacact
atcttgaaccaagcgcccagtccaccagtgtccatccgcacagtgcctggacctccagga
gagcctggtcgggaaggtgccccagggccccagggagaacagggaccaccaggaaggcca
ggctttcctggccagaatggtcaaaatggaaatcctggagaacgaggtcaaccaggagaa
aagggggagaagggatctgcaggcgttggtgtccagggccccagaggacctccaggacct
cctggtccccaaggactgggcagacctggcagccagggtccaacaggtcgccctggaaat
cctggaacttctggtcggcccggagttcccggtccagtcggccctccaggaccgccgggt
tactgtgaccagaactcttgtttgggctacaatgttggagaagttgaagagatcactgac
gtccgcggtatccctccagtccaacttccgtccagcgtcttccaaaactacggagaggca
gaagaggatgacccataccgctactaccagcccaactacccagctcctcaacccgtctcg
cctgatgaccccgcgctggcgctggacgatgtcgagctgaggtcccccggtgtgtaccgc
agcaaacggagcacgaaggcggaagaggtgcaagctgggacaaagaggagaataaagaga
ggagtgaagaatcttcctaaactaactaactga
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integrated database retrieval system
