Xiphophorus maculatus (southern platyfish): 102232124
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Entry
102232124 CDS
T02923
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102232124
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102232124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
102232124
NCBI-ProteinID:
XP_023205833
Ensembl:
ENSXMAG00000004412
LinkDB
All DBs
Position
17:7570598..7604519
Genome browser
AA seq
1814 aa
AA seq
DB search
MRTFLKTTPFILDFHKLLGSLELRLLSVFQEKRAPLWKMRAFIFSLAALALWSPVMGQEP
EFANMCTEGSCYPATGDLLIGRAHKLTASSTCGLQEPKRFCIVGHLEEEKKCFLCDSREM
YDEDNNPISHTIENVVTTFAPNRLKTWWQSENGVENVTIQLDLEAEFHFTHLIMTFKTFR
PAAMMIERSMDFGETWQVYRYFAQNCGSVFPGISTGPMRRVDEIICDTRYSDFEPSTEGE
VIFRVLDPAFEIDDPYSLRIQNMLKITNLRIKFIKLHTLGDNLVDFREEVTEKYYYALFD
MVVRGNCFCYGHASECAPMDREQGRPEGMVHGRCVCNHNTEGLNCERCQEFYHDLPWRPA
EGRNTHSCKRCECNRHSTSCHFDLAVYISTGNVSGGVCDDCQHNTVGRQCEQCAPFFYQH
PNRDLRDPNICEPCNCDPEGSLQGGLCDSRTDVAAGLISGQCRCKLYVEGERCDHCRQGH
YGLGQGPDGCLPCSCNILGTMPGGNPCDSDTGQCFCRRLVTGHNCDECLPEHWGLSNDMD
GCRPCDCDQGGAINNNCDPQSGQCVCRAHMFGRLCDQVESGFYFISLDHYTYEAEEAQHG
PGVKSVARAYPQDRSPTWTGMGFAHVPEGGYIEFNVNNIPQSMDYDILVRYEPQLPQQWE
QVTVRVERPVFNPPSYTAHCSTSAQSGDEQFISLPPGSRHVLLVSPVCLEKGLNYTIRLT
FPRYSLDSHIQNPHTLVDSLVLMPRVREMEMFHGMEGEEAWDTFQRYRCLESSRSVIKSP
MTDICNDYIFSISALLHKGAMTCHCDPQGSISAVCDPSGGQCRCRPNVVGRNCDHCAPAT
FLFSPAGCRSCDCDPLGSVTPFCHESTGQCECVQGATGRQCSHCLPGFWGFPQCRPCQCN
GHSEYCHPQTGECQGCRDFTTGHHCERCMNGYHGDPELGSGSHCRPCMCPDGPRSGRHFA
DSCYLLTNQMVCVCSHGYKGTRCDECAPGYYGNPLIPGGRCTPCDCNNNIDMHDPGSCDV
RTGACLKCLYHTQGHSCQQCKQGYYGDAATQSCRKCMCNSLGTTSYVCPTPDDCRCDQHN
GQCSCLPNVVGQNCDRCAPNTWNLASGTGCQRCDCDPIHAAGSSCDVVTGQCVCKPGFSG
RTCRECKELFWGNPEVKCHACDCEPEGISSGQCHRATGQCACLEGFSGRRCDRCATGYKG
DFPICEPCHQCFSVWDTVVGELTNQTRRLEAQVTELLTTGVTAPYKELISSLERNAKAVR
EIVLNKTASEKLENIQDLIHLINGVVSFLNGNLSTTQEDLNHVNDVANTTETNLDVLTEE
ANKLEQHVQMLIQQVHNTKNANIHGAMNTISAAHMESQDAELRSNATTSDPGNTLEQSAA
LRKATEDKLSSSQREFDRKHQRNAQKLDKLSKELDMFDLSSLSEKMCGGSGEGESCSTCG
GFGCDREDRAPHCGGEGCTGFVTTSQTALKSSQKLGQEIQQAMEEVDKLSRMVWEANIRA
NEAKAKAMDVLISSNRSKERVEQSNKQLRDLIKEIRDLLTNEKADASVIEAVANEVLALE
MPTSAEKLRELTNEIREKVGTLTSVEEILSQSAKDIRSAESLLTRAKSASEEASNVTAMA
HTVKAALEKTERAQSIAMDAIQLANNNTKETTDLINSVESETVQSELKLSETTGRLLELE
HEVGLLRQNNLEMNQKLETAERVSQRAKAIAEEAQKEFDEDLKDKLEVVEDYMEDKGESV
LQARSKADDLQREARELITQSNSKLQRLRELENSYEANQQVLEEKAEELAELERTARLIL
DEISQKVSLYSSCQ
NT seq
5445 nt
NT seq
+upstream
nt +downstream
nt
atgcgaacttttctgaagactactcccttcattcttgactttcacaaactcctcggcagc
ctggagttaagactcctcagcgtcttccaggaaaaacgggcgcctctctggaagatgagg
gccttcatcttctctctagcagctttagcgctgtggagtcctgtcatgggacaggagccg
gagtttgcaaatatgtgcacggagggcagctgctaccccgccacgggtgacctgctgatc
ggcagggcgcacaaactcaccgcttcctccacttgcggcctccaggagcccaagcgcttc
tgcattgtcggacacctggaagaggagaagaaatgtttcctatgtgactccagggagatg
tacgatgaggacaacaaccccatcagccatacgattgagaacgtggtcaccaccttcgcc
cccaatcgcctcaagacctggtggcagtctgagaatggtgtggagaatgtaactatccag
ctggacctggaggccgagtttcatttcacacacctcatcatgaccttcaagacgtttcgt
cctgctgccatgatgattgagcggtccatggattttggggaaacatggcaggtttataga
tacttcgcccaaaactgcgggtctgtctttcccggcatctccactggaccaatgcgtaga
gtggacgaaatcatctgtgacacccgctactcagactttgaaccatccacagagggagag
gtgatatttcgggtgctggatcctgcttttgagattgatgacccctacagcttgaggata
cagaacatgctgaagatcacaaacctcagaataaagttcatcaagctccacacgctgggc
gacaacctggtggatttcagagaggaagtgacggagaagtactactacgcgctctttgac
atggtcgtccgaggaaactgcttctgctacggccacgcctccgagtgcgcgcccatggac
agagaacagggcagacctgaaggaatggttcatggccgctgcgtttgcaaccataatact
gaggggctgaactgtgagcgctgccaagagttttaccacgacctgccatggagacctgcg
gagggccgaaacacccactcctgcaaaagatgcgagtgcaatcggcattccacgtcgtgt
cacttcgacctcgccgtgtacatttcaaccggtaacgttagcggaggcgtgtgcgacgac
tgccagcacaacacagtgggccggcagtgcgagcagtgtgcgcctttcttctaccagcac
cccaacagagacctgagagaccccaacatctgtgaaccgtgtaactgtgacccggaggga
tctctgcagggcggactgtgtgactcgcggactgatgtggcggccgggctgatctcgggt
caatgccggtgtaaactctatgtggagggagagcgctgtgaccactgcagacagggacac
tacggacttggacaggggccagatgggtgcctgccttgttcctgcaacatcctgggaaca
atgccaggaggaaacccctgtgattcagacacaggacagtgcttctgcaggcgacttgtc
accggtcacaactgtgatgagtgcctgccagagcactggggtctgtcaaatgacatggac
ggttgtagaccgtgtgactgcgaccagggaggagcaatcaacaacaactgtgacccccag
tcagggcagtgcgtttgccgggcgcacatgttcggacgcctctgcgatcaggtcgagtcc
ggattctacttcatctctttggatcactacacgtacgaagctgaagaggctcaacacggc
cctggggtcaaatctgttgcgagggcctatcctcaggaccggagccccacatggaccggg
atgggctttgctcatgtccctgaaggcgggtacatagagttcaatgtcaataacatccca
cagtcaatggactacgacatacttgtacgctacgagccgcagctgccgcagcagtgggag
caggtgaccgttcgggtcgagcgccccgtcttcaacccgccgagctacaccgctcactgc
agcacctccgcccagagcggagacgagcagttcatctctctcccacctggatccaggcat
gtgctgctcgtgagtccggtgtgtttggagaaaggactgaactacaccatccgtctgact
ttcccgcggtactctttggacagccacatccagaatccacacacgctcgtcgactctctg
gtgttgatgccccgggtcagagagatggaaatgtttcatgggatggagggtgaggaagcg
tgggacacatttcagcgctacagatgtttggaaagcagccgtagcgtcatcaaaagcccg
atgacggacatctgcaatgactacatcttcagcatctctgctctgctgcacaaaggagca
atgacttgccactgcgaccctcagggttccatcagcgccgtgtgcgatcccagcggcggt
cagtgtcgatgtcgacccaacgtggtcggcagaaactgcgaccactgcgctccggctacg
tttctgttcagtcctgctggctgcagatcttgtgactgcgacccgctgggctccgtcact
cctttctgtcacgaatcaactggtcagtgtgagtgtgtacagggagccacaggacgccag
tgttcccactgcttaccgggtttttgggggttccctcagtgccgaccgtgccagtgtaac
ggccatagcgagtactgtcaccctcagaccggagagtgtcaggggtgcagagacttcacc
accggacatcactgtgagagatgtatgaatggttaccatggtgacccggagctgggatca
gggagccactgtcgcccctgcatgtgtccggacggaccccgcagtggtcggcattttgca
gacagctgttaccttctaaccaatcagatggtgtgcgtgtgcagccacggctacaaagga
accaggtgtgatgagtgcgccccgggttattatgggaaccctctcattcccggtggccgc
tgcacgccctgtgattgcaacaacaacattgacatgcatgacccaggatcctgcgatgtc
cgcacaggtgcctgtctcaaatgtctgtaccacacgcagggccactcatgccagcaatgc
aaacagggatattacggcgacgccgccacacagagctgccggaagtgcatgtgcaactca
ttggggacgacatcttatgtctgtccaacccctgacgactgccgctgtgaccagcataat
ggccagtgttcctgcctgcccaacgtggtcgggcaaaactgtgaccgctgcgctcccaat
acgtggaacctcgccagtggaacgggctgccaacgatgcgactgcgaccctatccacgct
gccgggtcttcctgcgatgtggttacaggtcagtgtgtgtgcaaaccgggtttcagtggc
aggacgtgtcgagaatgcaaagagctgttctggggaaatccagaggtcaaatgtcacgct
tgcgactgtgaacccgagggaatctccagtggtcagtgtcatcgagccacagggcaatgt
gcctgcttagaaggcttctccggccgtcgctgtgaccgctgcgccacgggctacaagggg
gacttccccatctgcgaaccctgccaccagtgcttctccgtctgggacaccgttgtaggc
gagctgaccaatcagactcgtcgtctggaggcccaagttaccgagctgctaaccactgga
gtgacggcgccatacaaggagctgatcagcagtctggagagaaacgccaaggctgtcagg
gagattgtgctaaacaagaccgcttcagagaagctggagaacatccaagacctgatacat
ctgatcaatggagtggtgtcattcctcaacgggaatctgagcacaacacaggaagacctg
aatcatgttaacgatgtagcaaacacaacggaaacaaacttggatgtactgaccgaggag
gccaacaagttggagcaacacgtccaaatgctcatacagcaagtccacaacaccaagaac
gccaacatccatggagccatgaacacaatttctgctgcacacatggagtcccaagatgca
gagcttcgctccaatgccacaaccagtgatcctggcaacactctggagcagtcagctgca
ttacggaaagccactgaggacaaactgagcagtagtcagagggagtttgaccggaaacac
caaagaaacgcgcagaagctggacaagctgtccaaagagttggacatgtttgacttgtcc
tcgcttagtgagaagatgtgtggcggctcaggtgaaggggagagctgctccacctgcggc
ggattcgggtgtgacagggaggacagagcgccccactgtggaggggagggatgcaccggt
ttcgtcacaacgtctcaaactgccctgaaatcctcccagaagctgggccaggagatccag
caggccatggaggaggtggacaagctctccaggatggtttgggaagcaaacatccgcgca
aatgaggccaaagcgaaggcgatggatgtgctgatctcatccaatcgcagcaaagagaga
gtagagcagagcaacaagcaactccgtgacctcatcaaagagatccgcgaccttttgacc
aatgagaaggcagatgcttctgtgatcgaggcggtggccaatgaggtgctggctctggag
atgccgacatcggcggagaagctgcgggagctgaccaatgagatcagggagaaggtgggc
actctgaccagtgtggaggagatcctcagtcagagcgccaaagacatccgaagtgcagaa
tctctcctgactcgggccaaatcagcaagtgaggaggcatcaaatgtgacggcgatggcg
cacacagtgaaggcggcgttggaaaagactgagcgtgctcagagcatcgccatggacgcc
attcagctggccaataacaacacaaaagaaaccacagacctgatcaactctgtcgaatca
gagacggtacaatcggagctgaagctcagtgagaccaccggtcgtctgttggagctggag
catgaggtgggcctgctgaggcagaacaacctggagatgaaccagaagctggaaacggct
gagcgggtctcccaacgggccaaagcgatcgcagaagaggctcaaaaggagtttgatgag
gacctaaaggataaactggaggtggtggaagactacatggaggacaaaggggagtcggtg
ctgcaggcgaggagcaaagcagatgatctgcagcgagaagccagagagctgatcacacag
agcaacagcaagctgcagagactcagagagctggagaactcctacgaagccaaccagcag
gttctggaggagaaagcagaagagctggccgagctggagcgaacagcccgcctcatcctg
gatgagatcagccaaaaagtgtcgctttacagcagctgtcagtga
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