Xiphophorus maculatus (southern platyfish): 102232236
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Entry
102232236 CDS
T02923
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X6
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
102232236 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xma04131
]
102232236 (vps8)
Membrane trafficking [BR:
xma04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
102232236 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Clathrin
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
WD40_CDC20-Fz
zf-RING_Vps41
zf-RING_UBOX
zf_RING_Vps8_fungal
Beta-prop_WDR5
zf-RING_11
zf-RING_5
zf-RING_2
Beta-prop_EML_2
Beta-prop_HPS5
Beta-prop_THOC3
zf-C3HC4
Beta-prop_WDR3_1st
EIF3I
WDR55
zf-rbx1
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
102232236
NCBI-ProteinID:
XP_005812152
Ensembl:
ENSXMAG00000014834
LinkDB
All DBs
Position
22:28964701..28998633
Genome browser
AA seq
1403 aa
AA seq
DB search
MSQSPDSRSLLSASSQLNLMEVESIDDKEFDIPQVDTPPTLESILSQMEEEEDPFVLEDT
CLLNTDNMDAQSYDTSSLASSDSGDPAHLKRKRRTLDQNAAVHGSVLRLSLLKGISAQIV
AAADKVDAGLPTAIAMSGVIAVGTSHGLALVFDTNQALRLCLGSKTTGAEFGAVSALSIN
HDCSRVLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGGSV
FELTFRRVMGMRSCDSRCLFSGSKGEVCCIEPLRTPPDFRDHPITCYSLLAMASLTKILI
IGLKPSLNVWMTLPYTKSDPSSVPQLAWQFVPVQKTVNPMLAFCKGDSVHFLLVKKEETG
TIHVIKQRQLQLSCDIISLNWINSCSLVLLDSHEKLHVVDRPTQDVLETLDLEQVQLVYN
SRHFKSLATGGNVSQALALVGEKACYQSLSSYAGQIVCLGTKSAHIMSLRNWKERLDCLL
KQEHFTEALSLAWSFHEGTAKAVVGLHGDSQKRKAVISDKMVEILLHFTEYAVKKCPEQG
KLQVLEQHFQEVVPVLVDYCLLLQKADLLFNQLYSRLVENMVAKGVFLESLESYIVANRL
GHITTPVMKDLLAHYHDNGMMDSLERCIVHLDVTSLDIQQVVQVCWNNQLYDAVIYIFNR
GMNDYITPMEKLFSVIGPRVREGRSLTGDDVVMGNKLLVYISCCLAGRAYPIGDIPEDLV
VQVKYQVFEFLIRLHSGDSSQKEEVFPFIHTLLHFDTREFLNVLAMTFDDVQNDKQALEY
QQRIVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPNNTLFVNRNLFDQVLEFLCCPDD
DSRHTERQQVLLELLQVGGVVQFNEERLFMLAEKAKFYQICEFLYEKKHLYDRIVDCYLQ
DPLRKAEIFSYIHNLMSMPGYSSEEKLKVKEKVLQHMQELVSLDPGKLADLVVWHFTEEV
QTIISELQDDSLLFQFLRCLLKSQEGSQATSRLPLESEFYELLLDLMCRFEPQELLKFLH
TSQHYRLEEAIQITEKYHCNEAKAYLLEKKGDIPGAFAGLLQTLKDRLDVLAAEMSGSIG
GGVDGRDEEEANGEFTLTTVKSSLNQMILFCHRNCQNLDQEQRKDLWFPLLDTMMASQKE
VMGLSDKHISDGLKEMTLKVLNCMSSFISLPAIIQQILQDPVYGRGKLAEIQGLILGMLD
TFTYEQTLLETTTNLLNHDLHWSLAHLRSAVTKGLHPRQDCCNICLQHYKRKQDASEEII
VFSCGHLYHLQCLQQKDCGWGAASEPQQPWRCYKCSSSHGGRGGACSEPNRSRSASLAQT
RFSSGHHEKGTETHRKKVVAVATLDVQQELSWDHLRGLYRGPSRLSILSEVSHGHSSEKA
GFLLPAQPESFHLKLAPPPLFEE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagtctccagacagcaggagccttttatccgcttcttcccagctcaacctgatg
gaagtagagtcgattgacgataaggagtttgacattccccaagtggacaccccccccaca
ctggagagcatcctgagtcagatggaggaggaggaggacccttttgttctggaggacacc
tgccttttaaacacggacaacatggacgctcagtcctatgacacgtcctccttggccagc
tctgacagcggagacccggcacacctcaaacggaagagaaggactctggatcagaacgca
gcagttcacggctcggtccttcgcctcagcctgctgaagggcatctccgctcagatagtt
gctgctgctgacaaagtggatgctgggctgcccactgcaatagccatgtctggtgttatt
gccgtaggaacatctcatggtcttgccctggtgtttgacaccaaccaggctctgcggctc
tgtttgggcagcaagacaaccggagcggagttcggcgccgtctcggctcttagcatcaac
catgactgctcacgtgtgctgtgtggctttgccaagggtcagattacaatgtgggatctc
gccaacggaaagcttctgaggaccatcactgatgcccatcctccagggacggccatactg
catgtgaagtttacagatgacccaactctggccgtgtgcaacgacagcggagggtctgtg
tttgagctgaccttcaggagggtgatggggatgcgctcatgcgactcacggtgtctcttc
agcggctctaaaggagaggtgtgctgtatagaaccgctgcggactcctccagacttcaga
gaccaccccatcacatgctactctctcctagctatggcttccctaaccaagattctgatc
attggactcaagcccagcctgaatgtgtggatgactcttccctacactaagtctgacccc
agcagcgtgccccagctggcctggcagtttgttcctgtccagaagacggtcaaccccatg
ctggccttttgtaaaggagactcagtccacttcctgctggtgaagaaggaggagacgggc
accatccatgtgatcaagcagaggcagctgcagctgagctgtgacatcatcagcctgaac
tggatcaacagctgcagcctggtgctgctggacagccatgagaagcttcacgtggtggac
cggcccactcaggacgtcctggagacgctggacctggagcaggtgcagctggtctacaac
agtcggcacttcaagtccctggcaaccggagggaacgtctcccaggctctggcgctggtt
ggagaaaaggcctgctaccagtcactatcaagctatgcaggacagatcgtctgcctgggc
accaagtcagctcacattatgtccctaaggaactggaaagagcgtctggactgtttactg
aagcaggagcatttcactgaggctctgtctctggcctggtccttccatgaaggcaccgcc
aaggctgtggttggcctgcatggagattcacagaaaaggaaggcggttatcagtgacaag
atggtagagatccttctccattttacagagtacgctgtgaagaaatgcccagaacagggc
aagctgcaagtcctggagcagcatttccaggaagtggtgccagtcctggtggattattgc
ctcctgctgcagaaggctgacctgctgttcaaccagctgtactctcggctggtggagaac
atggttgctaagggcgtcttcctggagtcactggagtcgtacatcgtcgccaatcggctt
ggtcacatcactacgcctgttatgaaggacctcctggcacattaccatgacaacggtatg
atggacagcctggagagatgcattgttcatctggatgttaccagtctggacatacaacag
gtggtccaggtgtgttggaacaaccagctctatgatgcagtgatctatattttcaaccga
ggcatgaatgactacattactccaatggagaaactcttttcagtgattggtcctagagtc
agagaggggcggagcctaacaggcgatgatgtggtgatggggaataaattactagtttac
ataagctgctgtcttgctggaagagcctatccgatcggagacatccctgaagatctggtt
gttcaggtcaaataccaggtgtttgagttcctgatccgtctccattcaggcgactcctca
cagaaggaggaagtcttcccgtttattcacacactcctccactttgacactcgggagttc
ctaaatgttcttgccatgacgtttgatgatgtccagaacgacaagcaggccctggagtac
cagcagaggatagtggacatcttacttcaggtaatggtggacaaccctgacttcactccc
tcccaagtcggcggtctcttcaccttcctggctcggcagctggccaagccaaacaacacg
ctgtttgtgaacaggaacctttttgatcaggtgctggagttcctgtgttgccctgacgat
gactcccgacatactgaacggcagcaggttctgctggagctgctgcaggtcgggggtgtg
gtccagttcaacgaagaacggctcttcatgctggcagagaaagccaagttctaccagatc
tgtgagttcctttatgagaaaaagcatctgtatgaccgcatcgtggactgctacttacag
gacccacttcgaaaggcggaaatcttcagctacatccacaacctgatgtccatgccgggc
tacagctctgaggagaagctgaaggtcaaggagaaggtgctgcagcacatgcaggagctg
gtgagcctggatcctggtaaattagctgacctggtggtgtggcacttcacagaggaggtg
cagaccatcatctctgagctgcaggatgacagtctacttttccaattcctccgctgcctc
ctgaagtctcaggaaggatctcaggccacgtcccggctgcctctggagtctgaattttat
gagcttttgctggatctgatgtgccgctttgaaccacaggagcttttgaagttcctccac
acctcccagcattacaggcttgaggaggccatacagataacagagaagtaccactgtaat
gaagccaaggcttatctgctggagaagaagggagatattcctggagcatttgctggattg
ctgcagaccctgaaggacagactggatgtcctcgctgcagagatgagcggcagcattgga
ggaggagttgacggacgggacgaagaggaagcgaatggtgaattcacactgacgacggtg
aagagttcactcaaccaaatgattctcttctgtcatcgaaactgtcagaaccttgatcaa
gagcaaaggaaggatctgtggtttccactcctggacaccatgatggcctctcagaaggaa
gtcatggggctcagcgataaacacatctcagatgggctgaaggagatgaccctgaaggtt
ctcaactgtatgagcagctttatttcacttcctgccatcattcagcagatcctacaggat
ccagtttatggaagaggaaagctggcggagatccagggactcattctgggcatgctggac
acgttcacctatgaacagactctgcttgaaacaacaacaaatctgctgaaccacgacctc
cactggtccctggcacacctccgctccgctgtcaccaaagggcttcatccccgtcaggac
tgctgcaacatctgcctgcagcactacaagaggaagcaggacgcgtccgaggagatcatc
gtgttcagctgcggccacctgtaccacctgcagtgcctgcagcagaaggactgtgggtgg
ggcgcggcctcagagccgcagcagccatggaggtgctacaagtgttcctccagccatgga
ggaaggggcggggcttgttctgagccaaacagaagccgcagcgcgtctctagcccagact
cgattttcatcaggacatcatgagaaaggaactgagactcacaggaagaaggtggttgct
gtggcaacattggatgtgcagcaggagctctcctgggatcacttgcgagggttgtacagg
ggaccgtccaggctgtccatcctctctgaggtctcgcacggccacagcagtgagaaagca
ggcttcctgcttccagcccagccagagagtttccacctgaagctcgctcctcctcctctg
tttgaggagtag
DBGET
integrated database retrieval system
